GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

DANRE:HXC5A

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Danio rerio (Zebrafish) (Brachydanio rerio). (7955)
Gene Name(s) hoxc5a (synonyms: hox-3.4, hoxc5, zf25)
Protein Name(s) Homeobox protein Hox-C5a

Hox-C5 Homeobox protein Hox-3.4 Homeobox protein Zf-25

External Links
UniProt P09074
EMBL X68324
DQ060553
M18470
Y14539
PIR S48125
RefSeq NP_571219.1
UniGene Dr.132198
ProteinModelPortal P09074
SMR P09074
GeneID 30379
KEGG dre:30379
CTD 30379
ZFIN ZDB-GENE-980526-533
eggNOG NOG286013
HOGENOM HOG000231178
HOVERGEN HBG016849
InParanoid P09074
KO K09305
NextBio 20806794
PRO PR:P09074
Proteomes UP000000437
Bgee P09074
GO GO:0005634
GO:0043565
GO:0003700
GO:0007275
GO:0006351
Gene3D 1.10.10.60
InterPro IPR017995
IPR001827
IPR017970
IPR001356
IPR020479
IPR009057
Pfam PF00046
PRINTS PR00025
PR00024
SMART SM00389
SUPFAM SSF46689
PROSITE PS00032
PS00027
PS50071

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0009952

anterior/posterior pattern specification

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0000014
MGI:MGI:96177
MGI:MGI:96178
MGI:MGI:96179
MGI:MGI:96186
MGI:MGI:96187
MGI:MGI:96188
MGI:MGI:96196
MGI:MGI:96197
PANTHER:PTN002388214
WB:WBGene00001174

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0000014
FB:FBgn0003944
FB:FBgn0260642
MGI:MGI:96177
MGI:MGI:96179
MGI:MGI:96186
PANTHER:PTN002388214
UniProtKB:P09067
UniProtKB:P20719
WB:WBGene00001174

C

Seeded From UniProt

complete

enables

GO:0000980

RNA polymerase II distal enhancer sequence-specific DNA binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0001077
FB:FBgn0003944
MGI:MGI:96186
PANTHER:PTN002388214

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001356
InterPro:IPR001827
InterPro:IPR009057
InterPro:IPR017995
InterPro:IPR020479

F

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001827
InterPro:IPR017995

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR017995

C

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001827
InterPro:IPR017970
InterPro:IPR017995

P

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR017970

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037
GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238
UniProtKB-KW:KW-0371

F

Seeded From UniProt

complete

involved_in

GO:0007275

multicellular organism development

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0217

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page