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Category:Team quaternary structure

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StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
acceptableHORVU:HVA22Euglurie, Team quaternary structure2013-05-26 14:42:48 CDTGO:0005794 Golgi apparatus (C)PMID:18583533ECO:0000314 direct assay evidence used in manual assertion

Figure 6 and 7

challenge
acceptableHORVU:HVA22Euglurie, Team quaternary structure2013-05-26 14:41:32 CDTGO:0005783 endoplasmic reticulum (C)PMID:18583533ECO:0000314 direct assay evidence used in manual assertion

Figure 6 and 7

challenge
acceptableMEDTR:B3RH40Euglurie, Team quaternary structure2013-05-26 14:31:18 CDTGO:0005634 nucleus (C)PMID:18621693ECO:0000314 direct assay evidence used in manual assertion

Figure 3

challenge
acceptableBOTFB:HOG1Euglurie, Team quaternary structure2013-05-26 13:38:23 CDTGO:0005634 nucleus (C)PMID:22352714ECO:0000314 direct assay evidence used in manual assertion

Figure 7

challenge
acceptableTOXGO:B1B1P9Euglurie, Team quaternary structure2013-05-25 23:03:35 CDTGO:0005739 mitochondrion (C)PMID:18326043ECO:0000314 direct assay evidence used in manual assertion

Figure 4

challenge
acceptableTOXGO:B1B1P9Euglurie, Team quaternary structure2013-05-25 23:02:36 CDTGO:0020011 apicoplast (C)PMID:18326043ECO:0000314 direct assay evidence used in manual assertion

Figure 4

challenge
acceptableORYSJ:SAPK4Euglurie, Team quaternary structure2013-05-25 22:53:06 CDTGO:0005737 cytoplasm (C)PMID:18442365ECO:0000314 direct assay evidence used in manual assertion

Figure 2

challenge
acceptableORYSJ:SAPK4Euglurie, Team quaternary structure2013-05-25 22:52:12 CDTGO:0005634 nucleus (C)PMID:18442365ECO:0000314 direct assay evidence used in manual assertion

Figure 2

challenge
acceptableORYSJ:Q8LPA1Euglurie, Team quaternary structure2013-05-24 17:43:21 CDTGO:0009705 plant-type vacuole membrane (C)PMID:16249326ECO:0000314 direct assay evidence used in manual assertion

Figure 7

challenge
updatedbyinstructorORYSJ:Q8LPA2Euglurie, Team quaternary structure2013-05-24 17:40:08 CDTGO:0009705 plant-type vacuole membrane (C)PMID:16249326ECO:0000314 direct assay evidence used in manual assertion

Figure 7

challenge
acceptableORYSJ:RAC6Euglurie, Team quaternary structure2013-05-24 17:25:37 CDTGO:0005886 plasma membrane (C)PMID:16531052ECO:0000314 direct assay evidence used in manual assertion

Figure 7

challenge
acceptableSOLTU:RBOHBEuglurie, Team quaternary structure2013-05-24 17:18:37 CDTGO:0005886 plasma membrane (C)PMID:16551687ECO:0000314 direct assay evidence used in manual assertion

Figure 4

challenge
acceptableSOLTU:RBOHAEuglurie, Team quaternary structure2013-05-24 14:01:46 CDTGO:0005886 plasma membrane (C)PMID:16551687ECO:0000314 direct assay evidence used in manual assertion

Figure 4

challenge
acceptableHORVU:Q2PGC4Euglurie, Team quaternary structure2013-05-24 11:17:59 CDTGO:0005886 plasma membrane (C)PMID:16640594ECO:0000314 direct assay evidence used in manual assertion

Figure 4

challenge
updatedbyinstructorCICAR:Q7XZK4Euglurie, Team quaternary structure2013-05-24 11:11:51 CDTGO:0031226 plasma membrane (C)PMID:16716453ECO:0000314 direct assay evidence used in manual assertion

Figure 5 & 7

challenge
updatedbyinstructorCICAR:Q7XZK5Euglurie, Team quaternary structure2013-05-24 11:10:24 CDTGO:0031226 intrinsic to plasma membrane (C)PMID:16716453ECO:0000314 direct assay evidence used in manual assertion

Figure 5 & 7

challenge
acceptableSOYBN:Q08IT7Euglurie, Team quaternary structure2013-05-24 10:53:31 CDTGO:0005618 cell wall (C)PMID:16891302ECO:0000314 direct assay evidence used in manual assertion

Figure 5

challenge
acceptableVERFO:Q0QJH9Euglurie, Team quaternary structure2013-05-24 10:47:57 CDTGO:0005783 endoplasmic reticulum (C)PMID:16920778ECO:0000314 direct assay evidence used in manual assertion

Figure 5

challenge
acceptableVERFO:Q0QJI1Euglurie, Team quaternary structure2013-05-24 10:46:13 CDTGO:0005783 endoplasmic reticulum (C)PMID:16920778ECO:0000314 direct assay evidence used in manual assertion

Figure 5

challenge
acceptableSOYBN:I1KN68Euglurie, Team quaternary structure2013-05-12 17:57:00 CDTGO:0005737 cytoplasm (C)PMID:18310083ECO:0000314 direct assay evidence used in manual assertion

Figure 7

challenge
acceptableRHIME:Q92M29Euglurie, Team quaternary structure2013-05-12 17:33:32 CDTGO:0060187 cell pole (C)PMID:19602145ECO:0000314 direct assay evidence used in manual assertion

Figure 2

challenge
acceptableGLYSO:D8V833Euglurie, Team quaternary structure2013-05-12 17:17:01 CDTGO:0005886 plasma membrane (C)PMID:20400529ECO:0000314 direct assay evidence used in manual assertion

Figure 4

challenge
acceptableWHEAT:B5TQZ3Euglurie, Team quaternary structure2013-05-12 16:57:58 CDTGO:0005886 plasma membrane (C)PMID:20558896ECO:0000314 direct assay evidence used in manual assertion

Figure 6

challenge
acceptableGOSHI:F8J349Euglurie, Team quaternary structure2013-05-12 16:38:59 CDTGO:0005634 nucleus (C)PMID:21575189ECO:0000314 direct assay evidence used in manual assertion

Figure 3

challenge
acceptableALTBR:K4H1X2Euglurie, Team quaternary structure2013-05-12 16:09:34 CDTGO:0005634 nucleus (C)PMID:22185468ECO:0000314 direct assay evidence used in manual assertion

Figure 5

challenge
updatedbyinstructorCYAM1:M1VGG3Euglurie, Team quaternary structure2013-05-12 15:56:36 CDTGO:0009507 chloroplast (C)PMID:22361818ECO:0000314 direct assay evidence used in manual assertion

Figure 4C

challenge
acceptableORYSJ:HFC1BEuglurie, Team quaternary structure2013-05-12 15:26:46 CDTGO:0005634 nucleus (C)PMID:22616023ECO:0000314 direct assay evidence used in manual assertion

Figure 1

challenge
acceptableNEUCR:Q7SD74Euglurie, Team quaternary structure2013-05-12 14:53:19 CDTGO:0005829 cytosol (C)PMID:21750256ECO:0000314 direct assay evidence used in manual assertion

Figure 4

challenge
acceptable9POAL:M1FPW6Euglurie, Team quaternary structure2013-05-12 14:32:09 CDTGO:0005634 nucleus (C)PMID:23547108ECO:0000314 direct assay evidence used in manual assertion

Figure 3

challenge
updatedbyinstructorARATH:SGGPChlxu, Team quaternary structure2013-05-12 12:18:23 CDTGO:0050308 sugar-phosphatase activity (F)PMID:23179445ECO:0000314 direct assay evidence used in manual assertion

Fig 3.

challenge
updatedbyinstructorHUMAN:T2R38Chlxu, Team quaternary structure2013-05-12 11:57:04 CDTGO:0005886 plasma membrane (C)PMID:12379855ECO:0000314 direct assay evidence used in manual assertion

Fig.2 a

challenge
acceptableARATH:VOZ1Chlxu, Team quaternary structure2013-05-10 11:55:12 CDTGO:0042742 defense response to bacterium (P)PMID:23167462ECO:0000316 genetic interaction evidence used in manual assertion

Fig 8. Double mutant shows higher susceptibility to Pseudomonas syringae

needs relation RO:0002264 "acts upstream or within"

challenge
acceptableARATH:VOZ1Chlxu, Team quaternary structure2013-05-10 11:42:56 CDTGO:0009408 response to heat (P)PMID:23167462ECO:0000316 genetic interaction evidence used in manual assertion

Fig 6. Heat tolerance is decreased in VOZ1-VOZ2 double mutant, and VOZ2 expression level change in response to heat.

challenge
updatedbyinstructorARATH:VOZ1Chlxu, Team quaternary structure2013-05-10 10:58:03 CDTGO:0009414 response to water deprivation (P)PMID:23167462ECO:0000316 genetic interaction evidence used in manual assertion

Fig 5. Drought resistance is increased in VOZ1-VOZ2 double mutant

challenge
acceptableARATH:VOZ1Chlxu, Team quaternary structure2013-05-10 10:45:08 CDTGO:0009631 cold acclimation (P)PMID:23167462ECO:0000316 genetic interaction evidence used in manual assertion

Fig 1. direct assay of double mutant cold resistance

Fig 3. change in cold-resistance gene expression in double mutant

challenge
unacceptableWOLSP:FTSZChlxu, Team quaternary structure2013-05-06 12:19:31 CDTGO:0051258 protein polymerization (P)PMID:7689140ECO:0000247 sequence alignment evidence used in manual assertion

Fig 3.

In E.coli K12, ftsZ functions in protein polymerization inferred from direct assay PubMed 21321206 and PubMed 8917533 Source: EcoliWiki

challenge
unacceptableWOLSP:FTSZChlxu, Team quaternary structure2013-05-06 12:19:30 CDTGO:0051301 cell division (P)PMID:7689140ECO:0000247 sequence alignment evidence used in manual assertion

Fig 3.

In E.coli K12, ftsZ functions in cell division inferred from mutant phenotype PubMed 2045370. Source: EcoliWiki

challenge
unacceptableWOLSP:FTSZChlxu, Team quaternary structure2013-05-06 12:19:30 CDTGO:0005737 cytoplasm (C)PMID:7689140ECO:0000247 sequence alignment evidence used in manual assertion

Fig 3.

In E.coli K12, ftsZ is located in cytoplasm inferred from direct assay PubMed 1943703. Source: EcoliWiki

challenge
acceptableWOLSP:FTSZChlxu, Team quaternary structure2013-05-06 12:19:30 CDTGO:0005525 GTP binding (F)PMID:7689140ECO:0000247 sequence alignment evidence used in manual assertion

Fig 3.

In E.coli K12, ftsZ has GTP binding activity inferred from direct assay PMID:1528267 PMID:1528268 . Source: EcoliWiki

challenge
acceptableCOFAR:D2CFI2Euglurie, Team quaternary structure2013-04-28 17:41:02 CDTGO:0005886 plasma membrane (C)PMID:22023696ECO:0000314 direct assay evidence used in manual assertion

Figure 7

challenge
acceptableWHEAT:D6QXI6Euglurie, Team quaternary structure2013-04-28 17:26:52 CDTGO:0009536 plastid (C)PMID:22174625ECO:0000314 direct assay evidence used in manual assertion

Figure 5

challenge
acceptableORYSJ:MAD29Euglurie, Team quaternary structure2013-04-28 17:13:21 CDTGO:0005634 nucleus (C)PMID:22408076ECO:0000314 direct assay evidence used in manual assertion

Figure 6

challenge
updatedbyinstructorORYSJ:MAD29Euglurie, Team quaternary structure2013-04-28 17:11:29 CDTGO:0043068 positive regulation of programmed cell death (P)PMID:22408076ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5

challenge
acceptableORYSJ:MAD29Euglurie, Team quaternary structure2013-04-28 17:09:38 CDTGO:0019252 starch biosynthetic process (P)PMID:22408076ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3

challenge
acceptableORYSJ:MAD29Euglurie, Team quaternary structure2013-04-28 17:06:32 CDTGO:0048316 seed development (P)PMID:22408076ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4

challenge
acceptableSPOLT:I1VZI8Euglurie, Team quaternary structure2013-04-28 16:58:16 CDTGO:0005829 cytosol (C)PMID:22470457ECO:0000314 direct assay evidence used in manual assertion

Figure 8

challenge
acceptableBRANA:E7EAV8Euglurie, Team quaternary structure2013-04-28 16:52:38 CDTGO:0010227 floral organ abscission (P)PMID:22479468ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 9

challenge
acceptableORYSJ:SPS2Euglurie, Team quaternary structure2013-04-28 15:28:34 CDTGO:0009536 plastid (C)PMID:20421194ECO:0000314 direct assay evidence used in manual assertion

Figure 6

challenge
acceptableORYSJ:SPS1Euglurie, Team quaternary structure2013-04-28 15:26:02 CDTGO:0005739 mitochondrion (C)PMID:20421194ECO:0000314 direct assay evidence used in manual assertion

Figure 6

challenge
updatedbyinstructorWHEAT:D4P3N9Euglurie, Team quaternary structure2013-04-28 14:56:05 CDTGO:0050832 defense response to fungus (P)PMID:20795855ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5

challenge
acceptableHEVBR:B2D2I9Euglurie, Team quaternary structure2013-04-28 14:15:48 CDTGO:0004672 protein kinase activity (F)PMID:21071842ECO:0000314 direct assay evidence used in manual assertion

Figure 6

challenge
acceptableWOLTR:Q5GSD8Chlxu, Team quaternary structure2013-04-26 10:27:51 CDTGO:0044212 transcription regulatory region DNA binding (F)PMID:23251587ECO:0000314 direct assay evidence used in manual assertion

Fig.4B

"In electrophoretic mobility shift assays (EMSA), FAM-labeled DNA probes derived from the upstream region of ribA, virB8-1, virB3, virB4-2, virB8-2, virB9-2, sodA, wBmxR1 and wBmxR2, and were incubated with (+) or without (–) protein and loaded onto a 6% DNA retardation gel. " "(EMSA) showed ... wBmxR2 binds to virB4-2, ribA, and the wBmxR1 promoter regions (Fig. 4B, C)"

challenge
acceptableWOLTR:Q5GSQ0Chlxu, Team quaternary structure2013-04-26 10:21:36 CDTGO:0044212 transcription regulatory region DNA binding (F)PMID:23251587ECO:0000314 direct assay evidence used in manual assertion

Fig.4A "In electrophoretic mobility shift assays (EMSA), FAM-labeled DNA probes derived from the upstream region of ribA, virB8-1, virB3, virB4-2, virB8-2, virB9-2, sodA, wBmxR1 and wBmxR2, and were incubated with (+) or without (–) protein and loaded onto a 6% DNA retardation gel." "(EMSA) showed wBmxR1 binds to regions upstream of the virB9-2, ribA, sodA and wBmxR2 genes (Fig. 4A, C)"

challenge
acceptableWOLPM:Q73GA4Chlxu, Team quaternary structure2013-04-25 20:37:44 CDTGO:0003756 protein disulfide isomerase activity (F)PMID:18387819ECO:0000314 direct assay evidence used in manual assertion

The protein identifier is not present in the paper, but the locus number WD_1055 and whole genome accession number AE017196 are provided in the beginning of the material and method section. Genbank search finds the protein protein_id="AAS14712.1"/note="Identified by similarity to GP:15155781"

Fig.6 "a-DsbA1 has an activity similar to that of EcDsbA in the ScRNaseA isomerase assay."

challenge
updatedbyinstructorWOLPM:Q73GA4Chlxu, Team quaternary structure2013-04-25 20:27:45 CDTGO:0019153 protein-disulfide reductase (glutathione) activity (F)PMID:18387819ECO:0000314 direct assay evidence used in manual assertion

The protein identifier is not present in the paper, but the locus number WD_1055 and whole genome accession number AE017196 are provided in the beginning of the material and method section. Genbank search finds the protein protein_id="AAS14712.1"/note="Identified by similarity to GP:15155781"

Fig.5 "showed that a-DsbA1 exhibits oxidoreductase activity in the insu- lin reductase activity, at about the same level of activity as EcDsbA."

challenge
acceptable9RICK:Q93LF0Chlxu, Team quaternary structure2013-04-25 19:56:31 CDTGO:0006813 potassium ion transport (P)PMID:12652910ECO:0000247 sequence alignment evidence used in manual assertion

Figure 2 shows the alignment of e.coli K12 KefB to wolbachia KefKL gene. E.coli K12 KefB is annotated as potassium ion transport inferred from genetic interaction reported in the PMID:3301813.

challenge
requireschangesDROME:GRKChlxu, Team quaternary structure2013-04-24 22:44:00 CDTGO:0051702 interaction with symbiont (P)PMID:22193955ECO:0000314 direct assay evidence used in manual assertion

Fig.1,Wolbachia titer is affected by the host grk gene in stage 10A oocytes.Fig.2. Host grk dosage affects Wolbachia titer in stage 10A nurse cells.Fig.3.Wolbachia titer is affected by grk at stage 2–3 of oogenesis

challenge
updatedbyinstructorBRADI:I1GWP1Euglurie, Team quaternary structure2013-04-14 15:26:32 CDTGO:0009826 unidimensional cell growth (P)PMID:21457366ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 6

challenge
acceptableBRADI:Q6TCI2Chlxu, Team quaternary structure2013-04-12 10:40:28 CDTGO:0009611 response to wounding (P)PMID:20565595ECO:0000314 direct assay evidence used in manual assertion

Fig. 3A

challenge
acceptableBRADI:Q6TCI2Chlxu, Team quaternary structure2013-04-12 10:40:28 CDTGO:0032260 response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance (P)PMID:20565595ECO:0000314 direct assay evidence used in manual assertion

Fig. 3C

challenge
acceptableBRADI:I1J3T2Euglurie, Team quaternary structure2013-04-12 00:35:48 CDTGO:1901348 positive regulation of secondary cell wall biogenesis (P)PMID:23386682ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4: Inducible overexpression of SWN5 causes ectopic cell-wall formation

challenge

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Pages in category "Team quaternary structure"

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