GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

Category:Team Hu Ville

From GONUTS
Jump to: navigation, search
StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
unacceptableVIBF1:ARCASii, Team Hu Ville2013-11-10 17:51:59 CSTGO:0050790 regulation of catalytic activity (P)PMID:20693328ECO:0000315 mutant phenotype evidence used in manual assertion

figure 2

challenge
unacceptableVIBF1:ARCASii, Team Hu Ville2013-11-10 17:51:59 CSTGO:0050790 regulation of catalytic activity (P)PMID:20693328ECO:0000315 mutant phenotype evidence used in manual assertion

figure 4

challenge
requireschangesVIBF1:LUXJSii, Team Hu Ville2013-11-10 17:29:45 CSTGO:0006355 regulation of transcription, DNA-dependent (P)PMID:20693328ECO:0000255 match to sequence model evidence used in manual assertion

Figure 1

challenge
requireschangesVIBF1:LUXDSii, Team Hu Ville2013-11-10 17:02:22 CSTGO:0016740 transferase activity (F)PMID:20693328ECO:0000255 match to sequence model evidence used in manual assertion

figure 1

challenge
requireschangesPSEST:Q52519Atruchon, Team Hu Ville2013-10-27 17:57:18 CDTGO:0050421 nitrite reductase (NO-forming) activity (F)PMID:1539983ECO:0000314 direct assay evidence used in manual assertion

table 2.

challenge
acceptableHYDTH:Q3LGA9Atruchon, Team Hu Ville2013-10-27 17:24:06 CDTGO:0050421 nitrite reductase (NO-forming) activity (F)PMID:16781467ECO:0000314 direct assay evidence used in manual assertion

Table 1.

challenge
requireschangesRHOS4:CHRRAdries, Team Hu Ville2013-10-27 17:09:05 CDTGO:0016987 sigma factor activity (F)PMID:21295582ECO:0000314 direct assay evidence used in manual assertion

Figure 2,3, and 4

challenge
unacceptablePSEAE:Q9I4X0Wlee83, Team Hu Ville2013-10-27 12:08:31 CDTGO:0030528 transcription regulator activity (F)PMID:24157832ECO:0000314 direct assay evidence used in manual assertion

AmpR positively regulates critical QS regulators of the Las system, Rhl system and PQS. Expression of the genes was determined by

qPCR.

challenge
unacceptablePSEAE:RHLBWlee83, Team Hu Ville2013-10-27 12:04:25 CDTGO:0004004 ATP-dependent RNA helicase activity (F)PMID:24157832ECO:0000314 direct assay evidence used in manual assertion

AmpR positively regulates critical QS regulators of the Las system, Rhl system and PQS. Expression of the genes was determined by

qPCR.

challenge
unacceptablePSEAE:LASRWlee83, Team Hu Ville2013-10-27 12:00:58 CDTGO:0016563 transcription activator activity (F)PMID:24157832ECO:0000314 direct assay evidence used in manual assertion

Figure 8. AmpR positively regulates critical QS regulators of the Las system, Rhl system and PQS. Expression of the genes was determined by

qPCR.

challenge
requireschangesPSEAE:AMPRWlee83, Team Hu Ville2013-10-27 11:54:50 CDTGO:0030528 transcription regulator activity (F)PMID:24157832ECO:0000314 direct assay evidence used in manual assertion

Figure 5 Regulation of heat-shock response by AmpR.

challenge
requireschangesRHOCB:D5ATH7Adries, Team Hu Ville2013-10-13 17:26:14 CDTGO:0050136 NADH dehydrogenase (quinone) activity (F)PMID:9446680ECO:0000314 direct assay evidence used in manual assertion

Figure 1

challenge
unacceptableMYCTU:GRPEWlee83, Team Hu Ville2013-10-13 14:48:55 CDTGO:0008077 Hsp70/Hsp90 organizing protein activity (F)PMID:23867667ECO:0000314 direct assay evidence used in manual assertion

Figure 6: The mean absorbance significantly varied (P ≤ 0.05) among the groups. Group 1 (rOmp32 alone) had significantly lower antibody titre (P ≤ 0.05) as compared to both groups 2 (rOmp31 with rMTB-Hsp70) and 3 (rOmp31 with FIA). Further, group 3 had significantly higher antibody titre (P ≤ 0.05) as compared to group 2

challenge
updatedbyinstructorVIBF1:ARCASii, Team Hu Ville2013-10-11 17:17:21 CDTGO:0008218 bioluminescence (P)PMID:23152924ECO:0000316 genetic interaction evidence used in manual assertion

fig 2

challenge
updatedbyinstructorVIBF1:ARCASii, Team Hu Ville2013-10-07 07:48:43 CDTGO:0008218 bioluminescence (P)PMID:20693328ECO:0000315 mutant phenotype evidence used in manual assertion

Table 1

challenge
unacceptableVIBFI:G3FBF8Adries, Team Hu Ville2013-09-29 17:49:27 CDTGO:0008218 bioluminescence (P)PMID:94630ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3

challenge
unacceptableVIBFI:CPDPWlee83, Team Hu Ville2013-09-29 15:25:33 CDTGO:0047555 3',5'-cyclic-GMP phosphodiesterase activity (F)PMID:20061475ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3 Biofilm formation by binA syp double mutants. Mutants defective for both

binA and various syp genes.

challenge
unacceptable?Wlee83, Team Hu Ville2013-09-29 14:34:58 CDTGO:0018892 cyclohexylsulfamate metabolic process (Figure 2 describes the population-average (bulk

measurement) response of combinations of exogenous C8HSL and 3OC6HSL autoinducers, as measured by GFP fluorescence of strain

JB10.)
PMID:21959018IGI: Inferred from Genetic Interaction
challenge
unacceptableVIBFM:B5FE14Xhu52, Team Hu Ville2013-09-29 10:13:16 CDTGO:0004177 aminopeptidase activity (F)PMID:22636772ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3. Wild-type V. fischeri, pepN mutant, and pepN mutant expressing pepN on plasmid pVSV105.

challenge
unacceptableVIBFM:B5FE14Xhu52, Team Hu Ville2013-09-29 10:13:16 CDTGO:0004177 aminopeptidase activity (F)PMID:22636772ECO:0000315 mutant phenotype evidence used in manual assertion

FIG 5 Aggregation defect of the pepN mutant. Newly hatched squid were incubated with 106 GFP-labeled wild-type (A) or pepN mutant (B) V. fischeri for 3 h,counterstained with Cell Tracker Orange (red) to visualize the light organ surface, and then examined by confocal microscopy. (C) The number of bacteria per aggregate per light organ lobe was determined by direct counting, and averages, � standard deviations are shown.

challenge
requireschangesVIBFI:Q84B82Atruchon, Team Hu Ville2013-09-28 21:34:43 CDTGO:0008657 DNA topoisomerase (ATP-hydrolyzing) inhibitor activity (F)PMID:22582791ECO:0000314 direct assay evidence used in manual assertion

Fig 2. Shows CcdBvfi as a stabalizer of inhibitor activity. It is combined with different concentrations of CcdAvfi, and DNA gyrase to show the inhibition of DNA gyrase activity when CcdAvfi and CcdAvfi are unable to bind in a one to one ratio.

challenge
updatedbyinstructorALIFS:LUXISii, Team Hu Ville2013-09-28 12:12:33 CDTGO:0008218 bioluminescence (P)PMID:23152924ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4

challenge
unacceptable?Sii, Team Hu Ville2013-09-28 00:01:18 CDTGO:0052097 interspecies quorum sensing (Figure 5)PMID:23152924IMP: Inferred from Mutant Phenotype
challenge
updatedbyinstructorHUMAN:ARPC5Sii, Team Hu Ville2013-09-14 21:02:52 CDTGO:0016477 cell migration (P)PMID:22378351ECO:0000315 mutant phenotype evidence used in manual assertion

figure 4B

challenge
updatedbyinstructorRALSO:Q8XZS6Atruchon, Team Hu Ville2013-09-13 20:24:39 CDTGO:0033320 UDP-D-xylose biosynthetic process (P)PMID:20118241ECO:0000314 direct assay evidence used in manual assertion

Figure 9A,B.

challenge
updatedbyinstructor9BURK:A6BL27Atruchon, Team Hu Ville2013-09-13 19:15:26 CDTGO:0052689 carboxylic ester hydrolase activity (F)PMID:17584461ECO:0000314 direct assay evidence used in manual assertion

Table 2.

challenge

What do the icons mean in the status column?

assessment icons.jpg

Pages in category "Team Hu Ville"

The following 5 pages are in this category, out of 5 total.


Jump to pages starting with: A S W X