GONUTS has been updated to MW1.29.2. Most things seem to be working but be sure to report problems.

It is now the 3rd OPEN Period for CACAO Phage Hunters S2018! It will end on Friday July 20, 2018 at 05:59 pm CDT
This is your chance to make annotations OR challenge other team's annotations. You may also DEFEND or suggest improvements to your own annotations IF they have been challenged. Please note, although we ENCOURAGE challenges, an excess of identical challenges that do not appear to be applicable to the annotation or well thought out will be considered spam and ignored.

Have any questions? Please email us at ecoliwiki@gmail.com

Category:CACAO Spring 2015

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cacao.jpg
CACAO
the intercollegiate annotation competition!
The Community Assessment of Community Annotation with Ontologies (CACAO) is a competition for teams of undergrads around the world to improve the functional annotation of genes. CACAO was developed and is currently run at Texas A&M University, along with many other institutions. If you are interested in participating, please email us - ecoliwiki@gmail.com.
TAMU.jpg

CACAO Spring 2015

Please note: The calendar at the bottom may change slightly before the competition begins.


Don't forget - no binding terms (i.e. DNA binding, etc) & no response to terms (i.e. response to heat, etc)

Quick Links

  • Confused as to what is required in the Notes?
  • Need a GO term? There are a couple of similar choices:
  • EBI's tool has several useful features.
  • Try the GO Consortium's beta version of AmiGO! Make sure you search just the "Ontology" documents if prompted.
  • Use GONUTS

Participating schools

  • Centenary College of Louisiana
  • Suffolk University
  • Texas A&M University

Lecture slides

Past background info is at the About CACAO page. Links to new material will be posted here.

Evidence codes you are permitted to choose from

Here's a list of the evidence codes that CACAO students may use:

  1. IDA: Inferred from Direct Assay
  2. IMP: Inferred from Mutant Phenotype
  3. IGI: Inferred from Genetic Interaction - requires with/from field to be filled in
  4. ISO: Inferred from Sequence Orthology - requires with/from field to be filled in
  5. ISA: Inferred from Sequence Alignment - requires with/from field to be filled in
  6. ISM: Inferred from Sequence Model - requires with/from field to be filled in
  7. IGC: Inferred from Genomic Context

ALL other codes, even if used correctly, will cause the annotation to be rejected by the judges

Virus-related GO terms

  • For those of you interested in annotating proteins from viruses and phages:

Scoreboard

Calendar of Rounds

Inning Activity Start End Notes

0

instruction

2015-01-27 06:00 PM

2015-02-03 05:59 PM

1

annotation

2015-02-03 06:00 PM

2015-02-10 05:59 PM

1

challenge

2015-02-10 06:00 PM

2015-02-17 05:59 PM

2

annotation

2015-02-17 06:00 PM

2015-02-24 05:59 PM

2

challenge

2015-02-24 06:00 PM

2015-03-03 05:59 PM

3

annotation

2015-03-03 06:00 PM

2015-03-10 05:59 PM

3

challenge

2015-03-10 06:00 PM

2015-03-17 05:59 PM

Suffolk spring break is 8-13 March

4

annotation

2015-03-17 06:00 PM

2015-03-24 05:59 PM

TAMU Spring Break is 16-20 March

4

open

  • 2015-03-24
  • 06:00 PM
  • 2015-04-07
  • 05:59 PM

Spring Break make-up round. CC Spring Break is 30 March-3 April

5

annotation

2015-04-07 06:00 PM

2015-04-14 05:59 PM

5

challenge

2015-04-14 06:00 PM

2015-04-21 05:59 PM

instruction

  • 2015-04-21
  • 06:00 PM
  • 2015-04-21
  • 07:59 PM

Final meeting of CACAO at TAMU

Evaluations

Subcategories

This category has the following 16 subcategories, out of 16 total.