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Category:CACAO Spring 2015

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cacao.jpg
CACAO
the intercollegiate annotation competition!
The Community Assessment of Community Annotation with Ontologies (CACAO) is a competition for teams of undergrads around the world to improve the functional annotation of genes. CACAO was developed and is currently run at Texas A&M University, along with many other institutions. If you are interested in participating, please email us - ecoliwiki@gmail.com.
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CACAO Spring 2015

Please note: The calendar at the bottom may change slightly before the competition begins.


Don't forget - no binding terms (i.e. DNA binding, etc) & no response to terms (i.e. response to heat, etc)

Quick Links

  • Confused as to what is required in the Notes?
  • Need a GO term? There are a couple of similar choices:
  • EBI's tool has several useful features.
  • Try the GO Consortium's beta version of AmiGO! Make sure you search just the "Ontology" documents if prompted.
  • Use GONUTS

Participating schools

  • Centenary College of Louisiana
  • Suffolk University
  • Texas A&M University

Lecture slides

Past background info is at the About CACAO page. Links to new material will be posted here.

Evidence codes you are permitted to choose from

Here's a list of the evidence codes that CACAO students may use:

  1. IDA: Inferred from Direct Assay
  2. IMP: Inferred from Mutant Phenotype
  3. IGI: Inferred from Genetic Interaction - requires with/from field to be filled in
  4. ISO: Inferred from Sequence Orthology - requires with/from field to be filled in
  5. ISA: Inferred from Sequence Alignment - requires with/from field to be filled in
  6. ISM: Inferred from Sequence Model - requires with/from field to be filled in
  7. IGC: Inferred from Genomic Context

ALL other codes, even if used correctly, will cause the annotation to be rejected by the judges

Virus-related GO terms

  • For those of you interested in annotating proteins from viruses and phages:

Scoreboard

Calendar of Rounds

Inning Activity Start End Notes

0

instruction

2015-01-27 06:00 PM

2015-02-03 05:59 PM

1

annotation

2015-02-03 06:00 PM

2015-02-10 05:59 PM

1

challenge

2015-02-10 06:00 PM

2015-02-17 05:59 PM

2

annotation

2015-02-17 06:00 PM

2015-02-24 05:59 PM

2

challenge

2015-02-24 06:00 PM

2015-03-03 05:59 PM

3

annotation

2015-03-03 06:00 PM

2015-03-10 05:59 PM

3

challenge

2015-03-10 06:00 PM

2015-03-17 05:59 PM

Suffolk spring break is 8-13 March

4

annotation

2015-03-17 06:00 PM

2015-03-24 05:59 PM

TAMU Spring Break is 16-20 March

4

open

  • 2015-03-24
  • 06:00 PM
  • 2015-04-07
  • 05:59 PM

Spring Break make-up round. CC Spring Break is 30 March-3 April

5

annotation

2015-04-07 06:00 PM

2015-04-14 05:59 PM

5

challenge

2015-04-14 06:00 PM

2015-04-21 05:59 PM

instruction

  • 2015-04-21
  • 06:00 PM
  • 2015-04-21
  • 07:59 PM

Final meeting of CACAO at TAMU

Evaluations

Subcategories

This category has the following 16 subcategories, out of 16 total.