|
|
|
CACAO
the intercollegiate annotation competition!
|
| The Community Assessment of Community Annotation with Ontologies (CACAO) is a competition for teams of undergrads around the world to improve the functional annotation of genes. CACAO was developed and is currently run at Texas A&M University, along with many other institutions.
If you are interested in participating, please email us - ecoliwiki@gmail.com.
|
Calendar of Rounds
| Inning |
Activity |
Start |
End |
Notes
|
|
0
|
instruction
|
|
|
First week of classes at TAMU. Introduction
|
|
0
|
instruction
|
|
|
Training Continued
|
|
1
|
annotation
|
|
|
Requirement: one correct annotation per individual by the end of class on the 10th
Goal: 2 individual annotations submitted by end of round
|
|
1
|
open
|
|
|
Goal: 5 annotations submitted by end of round.
|
|
2
|
annotation
|
|
|
|
|
2
|
challenge
|
|
|
TAMU Requirement: 20 annotation points accepted by end of round
Goal: 2 challenges submitted by end of round.
|
|
3
|
annotation
|
|
|
|
|
3
|
challenge
|
|
|
|
|
4
|
open
|
|
|
Goal: 50 annotation points accepted by end of round
|
|
4
|
challenge
|
|
|
|
|
5
|
annotation
|
|
|
Goal: 70 annotation points accepted by end of round
|
|
5
|
open
|
|
|
|
|
6
|
open
|
|
|
FINAL ROUND FOR ANNOTATION
TAMU Requirement: 80 accepted annotation points by end of round
|
|
6
|
instruction
|
|
|
Final Class. Score Breakdown. Chocolate.
|
|
|
CACAO Fall 2019
|
- Don't forget - no binding terms (i.e. DNA binding, etc) & no response to terms (i.e. response to heat, etc)
Quick Links
Decision Tree: Experimental Codes (IMP, IDA, IGI, ISS)
Decision Tree: Sequence/Structure Codes (ISS, ISA, ISO, ISM)
Adding an Annotation Walkthrough
ECs for Common Experiments
- → Look through the helpful handouts for students shown above. This includes printable documents.
- For more help on evidence codes
Participating schools
- Texas A&M University
- University of the Philippines Visayas
Lecture Material
More background info can be found on the About CACAO page.
Challenges & judging slides
Virus-related GO terms
- For those of you interested in annotating proteins from viruses and phages:
|
|
Subcategories
This category has the following 5 subcategories, out of 5 total.
