GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

CHICK:TBPL1

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Gallus gallus (Chicken). (9031)
Gene Name(s) TBPL1 (synonyms: TBP)
Protein Name(s) TATA box-binding protein-like protein 1

TBP-like protein 1 TBP-like factor

External Links
UniProt Q9YGV8
EMBL AB024489
RefSeq NP_990086.1
UniGene Gga.4434
ProteinModelPortal Q9YGV8
STRING 9031.ENSGALP00000022616
Ensembl ENSGALT00000022656
GeneID 395517
KEGG gga:395517
CTD 9519
eggNOG COG2101
GeneTree ENSGT00410000025389
HOGENOM HOG000105162
HOVERGEN HBG044997
InParanoid Q9YGV8
KO K03120
OMA EGTNVIY
OrthoDB EOG7M3J1J
PhylomeDB Q9YGV8
TreeFam TF300102
NextBio 20815595
PRO PR:Q9YGV8
Proteomes UP000000539
GO GO:0005737
GO:0005672
GO:0003677
GO:0001675
GO:0006352
GO:0006235
GO:0006355
GO:0007289
Gene3D 3.30.310.10
InterPro IPR012295
IPR000814
PANTHER PTHR10126
Pfam PF00352
PRINTS PR00686

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0070898

RNA polymerase III preinitiation complex assembly

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000013138
SGD:S000000950

P

Seeded From UniProt

complete

enables

GO:0008134

transcription factor binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0003687
FB:FBgn0010287
PANTHER:PTN000013136
UniProtKB:P20226
WB:WBGene00006542

F

Seeded From UniProt

complete

involved_in

GO:0006366

transcription by RNA polymerase II

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0003687
FB:FBgn0261793
MGI:MGI:101838
PANTHER:PTN000013136
UniProtKB:P20226
UniProtKB:P52653
UniProtKB:Q8I440
ZFIN:ZDB-GENE-030616-563
ZFIN:ZDB-GENE-040520-2

P

Seeded From UniProt

complete

part_of

GO:0005669

transcription factor TFIID complex

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0003687
PANTHER:PTN000013137
PomBase:SPAC29E6.08
RGD:67398
SGD:S000000950
UniProtKB:P20226
UniProtKB:Q8I440

C

Seeded From UniProt

complete

part_of

GO:0005667

transcription factor complex

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

CGD:CAL0000189736
FB:FBgn0010287
FB:FBgn0261793
PANTHER:PTN000013136

C

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0261793
MGI:MGI:2684058
PANTHER:PTN000013136
RGD:67398
WB:WBGene00006542

F

Seeded From UniProt

complete

enables

GO:0001016

RNA polymerase III regulatory region DNA binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000013138
SGD:S000000950

F

Seeded From UniProt

complete

enables

GO:0000979

RNA polymerase II core promoter sequence-specific DNA binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0261793
PANTHER:PTN000013136
PomBase:SPAC29E6.08
SGD:S000000950

F

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0003687
FB:FBgn0010287
MGI:MGI:101838
PANTHER:PTN000013136
UniProtKB:P62380

F

Seeded From UniProt

complete

part_of

GO:0000126

transcription factor TFIIIB complex

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0003687
PANTHER:PTN000013138
SGD:S000000950
dictyBase:DDB_G0275617

C

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P62380
ensembl:ENSP00000237264

P

Seeded From UniProt

complete

enables

GO:0001228

DNA-binding transcription activator activity, RNA polymerase II-specific

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P62380
ensembl:ENSP00000237264

F

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P62380
ensembl:ENSP00000237264

F

Seeded From UniProt

complete

involved_in

GO:0007289

spermatid nucleus differentiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P62340
ensembl:ENSMUSP00000114223

P

Seeded From UniProt

complete

involved_in

GO:0007283

spermatogenesis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P62340
ensembl:ENSMUSP00000114223

P

Seeded From UniProt

complete

involved_in

GO:0006235

dTTP biosynthetic process

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P62340
ensembl:ENSMUSP00000114223

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P62340
ensembl:ENSMUSP00000114223

C

Seeded From UniProt

complete

part_of

GO:0005672

transcription factor TFIIA complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P62340
ensembl:ENSMUSP00000114223

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P62340
ensembl:ENSMUSP00000114223

C

Seeded From UniProt

complete

involved_in

GO:0001675

acrosome assembly

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P62340
ensembl:ENSMUSP00000114223

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000814

F

Seeded From UniProt

complete

involved_in

GO:0006352

DNA-templated transcription, initiation

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000814

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page