GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

CHICK:SRF

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Gallus gallus (Chicken). (9031)
Gene Name(s) SRF
Protein Name(s) Serum response factor

SRF

External Links
UniProt Q90718
EMBL U50596
UniGene Gga.2013
ProteinModelPortal Q90718
SMR Q90718
MINT MINT-194447
STRING 9031.ENSGALP00000021614
eggNOG COG5068
HOGENOM HOG000012380
HOVERGEN HBG014968
InParanoid Q90718
PhylomeDB Q90718
Proteomes UP000000539
GO GO:0005634
GO:0003677
GO:0007275
GO:0006355
GO:0006351
InterPro IPR002100
Pfam PF00319
PRINTS PR00404
SMART SM00432
SUPFAM SSF55455
PROSITE PS00350
PS50066

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0030036

actin cytoskeleton organization

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9JM73

P

Seeded From UniProt

complete

involved_in

GO:0010735

positive regulation of transcription via serum response element binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9JM73

P

Seeded From UniProt

complete

enables

GO:0010736

serum response element binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9JM73

F

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9JM73

F

Seeded From UniProt

complete

enables

GO:0044212

transcription regulatory region DNA binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000235373
TAIR:locus:2137070

F

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:106658
PANTHER:PTN000235373
RGD:1559787
TAIR:locus:2041233
TAIR:locus:2121924
TAIR:locus:2152511
UniProtKB:Q38876

F

Seeded From UniProt

complete

enables

GO:0008134

transcription factor binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000235373
TAIR:locus:2005522
UniProtKB:P11831

F

Seeded From UniProt

complete

involved_in

GO:0007275

multicellular organism development

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000235373
UniProtKB:Q9XJ66

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004101
MGI:MGI:106658
PANTHER:PTN000235373
RGD:1559787
SGD:S000004645
SGD:S000004646
TAIR:locus:2005522
TAIR:locus:2033273
TAIR:locus:2041233
TAIR:locus:2047304
TAIR:locus:2121924
TAIR:locus:2127213
TAIR:locus:2137070
TAIR:locus:2152511
UniProtKB:O22456
UniProtKB:P11831
UniProtKB:P17839
UniProtKB:Q8VXG0
UniProtKB:Q9FPN7
WB:WBGene00006844
ZFIN:ZDB-GENE-990714-29

C

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR033897

F

Seeded From UniProt

complete

enables

GO:0000987

proximal promoter sequence-specific DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR033897

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002100
InterPro:IPR036879

F

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR033897

P

Seeded From UniProt

complete

enables

GO:0046983

protein dimerization activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002100
InterPro:IPR036879

F

Seeded From UniProt

complete

involved_in

GO:0007275

multicellular organism development

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0217

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 1.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page