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CHICK:PSPC1

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Species (Taxon ID) Gallus gallus (Chicken). (9031)
Gene Name(s) PSPC1
Protein Name(s) Paraspeckle component 1
External Links
UniProt Q5ZK88
EMBL AJ720196
RefSeq NP_001026002.1
UniGene Gga.4178
ProteinModelPortal Q5ZK88
SMR Q5ZK88
STRING 9031.ENSGALP00000035658
PaxDb Q5ZK88
PRIDE Q5ZK88
Ensembl ENSGALT00000036438
GeneID 418955
KEGG gga:418955
CTD 55269
eggNOG NOG298586
GeneTree ENSGT00390000005004
HOGENOM HOG000231095
HOVERGEN HBG009801
InParanoid Q5ZK88
OMA MDNREQE
PhylomeDB Q5ZK88
NextBio 20822076
PRO PR:Q5ZK88
Proteomes UP000000539
GO GO:0005737
GO:0016363
GO:0016607
GO:0005730
GO:0042382
GO:0000166
GO:0044822
GO:0042752
GO:0006355
GO:0048511
GO:0006351
Gene3D 3.30.70.330
InterPro IPR012975
IPR012677
IPR000504
Pfam PF08075
PF00076
SMART SM00360
PROSITE PS50102

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0042752

regulation of circadian rhythm

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q8R326

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004227
FB:FBgn0016977
FB:FBgn0027548
MGI:MGI:1855692
MGI:MGI:1891706
MGI:MGI:2443205
MGI:MGI:2443623
PANTHER:PTN000573351
PomBase:SPAC222.09
UniProtKB:P23246
UniProtKB:Q15233
UniProtKB:Q8IJI0
WB:WBGene00017929

C

Seeded From UniProt

complete

enables

GO:0000976

transcription regulatory region sequence-specific DNA binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1918764
PANTHER:PTN000573360

F

Seeded From UniProt

complete

enables

GO:0070888

E-box binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q8R326
ensembl:ENSMUSP00000022507

F

Seeded From UniProt

complete

involved_in

GO:0045892

negative regulation of transcription, DNA-templated

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q8R326
ensembl:ENSMUSP00000022507

P

Seeded From UniProt

complete

involved_in

GO:0042752

regulation of circadian rhythm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q8R326
ensembl:ENSMUSP00000022507

P

Seeded From UniProt

complete

part_of

GO:0042382

paraspeckles

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q8R326
ensembl:ENSMUSP00000022507

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q8R326
ensembl:ENSMUSP00000022507

C

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q8R326
ensembl:ENSMUSP00000022507

F

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q8WXF1
ensembl:ENSP00000343966

C

Seeded From UniProt

complete

involved_in

GO:0002218

activation of innate immune response

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q8WXF1
ensembl:ENSP00000343966

P

Seeded From UniProt

complete

part_of

GO:0001650

fibrillar center

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q8WXF1
ensembl:ENSP00000343966

C

Seeded From UniProt

complete

enables

GO:0003676

nucleic acid binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000504
InterPro:IPR035979

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539

C

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0694

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

involved_in

GO:0048511

rhythmic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0090

P

Seeded From UniProt

complete

part_of

GO:0016607

nuclear speck

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0186

C

Seeded From UniProt

complete

part_of

GO:0016363

nuclear matrix

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0181

C

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0188

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page