CHICK:MYOD1

Species (Taxon ID)	Gallus gallus (Chicken). (9031)
Gene Name(s)	MYOD1 (synonyms: CMD1, MYOD)
Protein Name(s)	Myoblast determination protein 1 homolog MYOD1 homolog
External Links
UniProt	P16075
EMBL	X16189 L34006
PIR	A32872
RefSeq	NP_989545.1
UniGene	Gga.750
ProteinModelPortal	P16075
SMR	P16075
PaxDb	P16075
GeneID	374048
KEGG	gga:374048
CTD	4654
eggNOG	NOG292792
HOGENOM	HOG000234800
HOVERGEN	HBG006429
InParanoid	P16075
KO	K09064
PhylomeDB	P16075
NextBio	20813570
PRO	PR:P16075
Proteomes	UP000000539
GO	GO:0005634 GO:0005667 GO:0031490 GO:0001047 GO:0070888 GO:0046982 GO:0071392 GO:0043966 GO:0043967 GO:0042693 GO:0007517 GO:0045944 GO:0006351
Gene3D	4.10.280.10
InterPro	IPR002546 IPR011598 IPR022032
Pfam	PF01586 PF00010 PF12232
SMART	SM00520 SM00353
SUPFAM	SSF47459
PROSITE	PS50888

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
	GO:0045941	positive regulation of transcription	PMID:8035824^[1]	ECO:0000314			P	Figure 2	complete
	GO:0055001	muscle cell development	8035824	ECO:0000315			P	Figure 3	Missing: reference
	GO:0070888	E-box binding	PMID:8035824^[1]	ECO:0000314			F	Figure 4	complete
	GO:0010843	promoter binding	PMID:8035824^[1]	ECO:0000021		UniProtKB:Q8C854	F	FIG.6: Binding of MEF-2 to the CMD1 promoter..	complete
enables	GO:1990841	promoter-specific chromatin binding	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P10085	F	Seeded From UniProt	complete
involved_in	GO:1905382	positive regulation of snRNA transcription by RNA polymerase II	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P10085	P	Seeded From UniProt	complete
involved_in	GO:0007517	muscle organ development	PMID:16554187^[2]	ECO:0000303	author statement without traceable support used in manual assertion		P	Seeded From UniProt	complete
enables	GO:0070888	E-box binding	PMID:8035824^[1]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
enables	GO:0046982	protein heterodimerization activity	PMID:8035824^[1]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
involved_in	GO:0045944	positive regulation of transcription by RNA polymerase II	PMID:8035824^[1]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0042693	muscle cell fate commitment	PMID:8035824^[1]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
part_of	GO:0005667	transcription factor complex	PMID:8035824^[1]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
involved_in	GO:0071392	cellular response to estradiol stimulus	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P10085	P	Seeded From UniProt	complete
involved_in	GO:0043967	histone H4 acetylation	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P10085	P	Seeded From UniProt	complete
involved_in	GO:0043966	histone H3 acetylation	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P10085	P	Seeded From UniProt	complete
enables	GO:0031490	chromatin DNA binding	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P10085	F	Seeded From UniProt	complete
enables	GO:0070888	E-box binding	GO_REF:0000024	ECO:0000250	sequence similarity evidence used in manual assertion	UniProtKB:P10085	F	Seeded From UniProt	complete
involved_in	GO:1901741	positive regulation of myoblast fusion	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000164853 UniProtKB:P15172	P	Seeded From UniProt	complete
involved_in	GO:0048743	positive regulation of skeletal muscle fiber development	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	MGI:MGI:97276 PANTHER:PTN000898840	P	Seeded From UniProt	complete
involved_in	GO:0045944	positive regulation of transcription by RNA polymerase II	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	MGI:MGI:97252 MGI:MGI:97275 MGI:MGI:97276 PANTHER:PTN000164853 RGD:620432 UniProtKB:P15172 UniProtKB:P15173 UniProtKB:P16075 UniProtKB:P17920 UniProtKB:Q01795 WB:WBGene00001948	P	Seeded From UniProt	complete
involved_in	GO:0045663	positive regulation of myoblast differentiation	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	MGI:MGI:97276 PANTHER:PTN000164853	P	Seeded From UniProt	complete
involved_in	GO:0035914	skeletal muscle cell differentiation	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	MGI:MGI:97252 MGI:MGI:97253 MGI:MGI:97275 PANTHER:PTN000898840 ZFIN:ZDB-GENE-980526-561	P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0002922 MGI:MGI:97275 MGI:MGI:97276 PANTHER:PTN000164853 RGD:620432 RGD:631429 WB:WBGene00001948	C	Seeded From UniProt	complete
enables	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	MGI:MGI:97252 MGI:MGI:97253 MGI:MGI:97275 MGI:MGI:97276 PANTHER:PTN000164853 UniProtKB:P15172 UniProtKB:P15173	F	Seeded From UniProt	complete
enables	GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	MGI:MGI:97275 MGI:MGI:97276 PANTHER:PTN000164853 RGD:620432	F	Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR002546	F	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR002546	C	Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR002546 InterPro:IPR039704	P	Seeded From UniProt	complete
involved_in	GO:0007517	muscle organ development	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR002546 InterPro:IPR039704	P	Seeded From UniProt	complete
enables	GO:0046983	protein dimerization activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR011598 InterPro:IPR036638	F	Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0238	F	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C	Seeded From UniProt	complete
involved_in	GO:0030154	cell differentiation	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0221	P	Seeded From UniProt	complete
involved_in	GO:0007275	multicellular organism development	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0217	P	Seeded From UniProt	complete
involved_in	GO:0007517	muscle organ development	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0517	P	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 Dechesne, CA et al. (1994) E-box- and MEF-2-independent muscle-specific expression, positive autoregulation, and cross-activation of the chicken MyoD (CMD1) promoter reveal an indirect regulatory pathway. Mol. Cell. Biol. 14 5474-86 PubMed GONUTS page
↑ Stricker, S et al. (2006) Comparative expression pattern of Odd-skipped related genes Osr1 and Osr2 in chick embryonic development. Gene Expr. Patterns 6 826-34 PubMed GONUTS page
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 ^3.5 ^3.6 ^3.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:8035824-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 Dechesne, CA et al. (1994) E-box- and MEF-2-independent muscle-specific expression, positive autoregulation, and cross-activation of the chicken MyoD (CMD1) promoter reveal an indirect regulatory pathway. Mol. Cell. Biol. 14 5474-86 PubMed GONUTS page

[PMID:16554187-2] Stricker, S et al. (2006) Comparative expression pattern of Odd-skipped related genes Osr1 and Osr2 in chick embryonic development. Gene Expr. Patterns 6 826-34 PubMed GONUTS page

[PMID:21873635-3] 3.0 ^3.1 ^3.2 ^3.3 ^3.4 ^3.5 ^3.6 ^3.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

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CHICK:MYOD1

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Notes

References

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