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CHICK:MYOD1

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Species (Taxon ID) Gallus gallus (Chicken). (9031)
Gene Name(s) MYOD1 (synonyms: CMD1, MYOD)
Protein Name(s) Myoblast determination protein 1 homolog

MYOD1 homolog

External Links
UniProt P16075
EMBL X16189
L34006
PIR A32872
RefSeq NP_989545.1
UniGene Gga.750
ProteinModelPortal P16075
SMR P16075
PaxDb P16075
GeneID 374048
KEGG gga:374048
CTD 4654
eggNOG NOG292792
HOGENOM HOG000234800
HOVERGEN HBG006429
InParanoid P16075
KO K09064
PhylomeDB P16075
NextBio 20813570
PRO PR:P16075
Proteomes UP000000539
GO GO:0005634
GO:0005667
GO:0031490
GO:0001047
GO:0070888
GO:0046982
GO:0071392
GO:0043966
GO:0043967
GO:0042693
GO:0007517
GO:0045944
GO:0006351
Gene3D 4.10.280.10
InterPro IPR002546
IPR011598
IPR022032
Pfam PF01586
PF00010
PF12232
SMART SM00520
SM00353
SUPFAM SSF47459
PROSITE PS50888

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0045941

positive regulation of transcription

PMID:8035824[1]

ECO:0000314

P

Figure 2

complete

GO:0055001

muscle cell development

8035824

ECO:0000315

P

Figure 3

Missing: reference

GO:0070888

E-box binding

PMID:8035824[1]

ECO:0000314

F

Figure 4

complete

GO:0010843

promoter binding

PMID:8035824[1]

ECO:0000021

UniProtKB:Q8C854


F

FIG.6: Binding of MEF-2 to the CMD1 promoter..

complete

enables

GO:1990841

promoter-specific chromatin binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P10085

F

Seeded From UniProt

complete

involved_in

GO:1905382

positive regulation of snRNA transcription by RNA polymerase II

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P10085

P

Seeded From UniProt

complete

involved_in

GO:0007517

muscle organ development

PMID:16554187[2]

ECO:0000303

author statement without traceable support used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0070888

E-box binding

PMID:8035824[1]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0046982

protein heterodimerization activity

PMID:8035824[1]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:8035824[1]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0042693

muscle cell fate commitment

PMID:8035824[1]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005667

transcription factor complex

PMID:8035824[1]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0071392

cellular response to estradiol stimulus

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P10085

P

Seeded From UniProt

complete

involved_in

GO:0043967

histone H4 acetylation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P10085

P

Seeded From UniProt

complete

involved_in

GO:0043966

histone H3 acetylation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P10085

P

Seeded From UniProt

complete

enables

GO:0031490

chromatin DNA binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P10085

F

Seeded From UniProt

complete

enables

GO:0070888

E-box binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P10085

F

Seeded From UniProt

complete

involved_in

GO:1901741

positive regulation of myoblast fusion

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000164853
UniProtKB:P15172

P

Seeded From UniProt

complete

involved_in

GO:0048743

positive regulation of skeletal muscle fiber development

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:97276
PANTHER:PTN000898840

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:97252
MGI:MGI:97275
MGI:MGI:97276
PANTHER:PTN000164853
RGD:620432
UniProtKB:P15172
UniProtKB:P15173
UniProtKB:P16075
UniProtKB:P17920
UniProtKB:Q01795
WB:WBGene00001948

P

Seeded From UniProt

complete

involved_in

GO:0045663

positive regulation of myoblast differentiation

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:97276
PANTHER:PTN000164853

P

Seeded From UniProt

complete

involved_in

GO:0035914

skeletal muscle cell differentiation

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:97252
MGI:MGI:97253
MGI:MGI:97275
PANTHER:PTN000898840
ZFIN:ZDB-GENE-980526-561

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0002922
MGI:MGI:97275
MGI:MGI:97276
PANTHER:PTN000164853
RGD:620432
RGD:631429
WB:WBGene00001948

C

Seeded From UniProt

complete

enables

GO:0001228

DNA-binding transcription activator activity, RNA polymerase II-specific

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:97252
MGI:MGI:97253
MGI:MGI:97275
MGI:MGI:97276
PANTHER:PTN000164853
UniProtKB:P15172
UniProtKB:P15173

F

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

PMID:21873635[3]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:97275
MGI:MGI:97276
PANTHER:PTN000164853
RGD:620432

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002546

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002546

C

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002546
InterPro:IPR039704

P

Seeded From UniProt

complete

involved_in

GO:0007517

muscle organ development

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002546
InterPro:IPR039704

P

Seeded From UniProt

complete

enables

GO:0046983

protein dimerization activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR011598
InterPro:IPR036638

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

involved_in

GO:0030154

cell differentiation

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0221

P

Seeded From UniProt

complete

involved_in

GO:0007275

multicellular organism development

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0217

P

Seeded From UniProt

complete

involved_in

GO:0007517

muscle organ development

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0517

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Dechesne, CA et al. (1994) E-box- and MEF-2-independent muscle-specific expression, positive autoregulation, and cross-activation of the chicken MyoD (CMD1) promoter reveal an indirect regulatory pathway. Mol. Cell. Biol. 14 5474-86 PubMed GONUTS page
  2. Stricker, S et al. (2006) Comparative expression pattern of Odd-skipped related genes Osr1 and Osr2 in chick embryonic development. Gene Expr. Patterns 6 826-34 PubMed GONUTS page
  3. 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page