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CHICK:IFNB
Contents
| Species (Taxon ID) | Gallus gallus (Chicken). (9031) | |
| Gene Name(s) | IFNB (synonyms: IFN2) | |
| Protein Name(s) | Interferon type B
IFN-beta | |
| External Links | ||
| UniProt | Q90873 | |
| EMBL | X92479 AY974089 | |
| RefSeq | NP_001020007.1 | |
| UniGene | Gga.22865 | |
| ProteinModelPortal | Q90873 | |
| STRING | 9031.ENSGALP00000038687 | |
| Ensembl | ENSGALT00000039477 | |
| GeneID | 554219 | |
| KEGG | gga:554219 | |
| CTD | 554219 | |
| eggNOG | NOG276534 | |
| GeneTree | ENSGT00730000111684 | |
| HOGENOM | HOG000208434 | |
| HOVERGEN | HBG052087 | |
| InParanoid | Q90873 | |
| KO | K05415 | |
| OMA | SINKYFR | |
| OrthoDB | EOG7WMCKW | |
| PhylomeDB | Q90873 | |
| TreeFam | TF336177 | |
| NextBio | 20880732 | |
| PRO | PR:Q90873 | |
| Proteomes | UP000000539 | |
| GO | GO:0005615 GO:0005125 GO:0005132 GO:0002250 GO:0030183 GO:0042100 GO:0019221 GO:0051607 GO:0006959 GO:0002323 GO:0045918 GO:0033141 GO:2000379 GO:0034141 GO:0043330 GO:0002286 | |
| Gene3D | 1.20.1250.10 | |
| InterPro | IPR009079 IPR012351 IPR000471 | |
| PANTHER | PTHR11691 | |
| Pfam | PF00143 | |
| SMART | SM00076 | |
| SUPFAM | SSF47266 | |
| PROSITE | PS00252 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
involved_in |
GO:2000379 |
positive regulation of reactive oxygen species metabolic process |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0051607 |
defense response to virus |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0045918 |
negative regulation of cytolysis |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0034141 |
positive regulation of toll-like receptor 3 signaling pathway |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005125 |
cytokine activity |
ECO:0000303 |
author statement without traceable support used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0043330 |
response to exogenous dsRNA |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000914537 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0042100 |
B cell proliferation |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:107657 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0033141 |
positive regulation of peptidyl-serine phosphorylation of STAT protein |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000914537 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0030183 |
B cell differentiation |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2448469 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0019221 |
cytokine-mediated signaling pathway |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2448469 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006959 |
humoral immune response |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:107657 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005615 |
extracellular space |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:107657 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0005132 |
type I interferon receptor binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:107657 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0005125 |
cytokine activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:107657 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0002323 |
natural killer cell activation involved in immune response |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:107659 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0002286 |
T cell activation involved in immune response |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:107668 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0002250 |
adaptive immune response |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:107657 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0010469 |
regulation of signaling receptor activity |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0005125 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0010469 |
regulation of signaling receptor activity |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0005125 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0010469 |
regulation of signaling receptor activity |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0005125 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0005126 |
cytokine receptor binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005576 |
extracellular region |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006952 |
defense response |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005615 |
extracellular space |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0051607 |
defense response to virus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005576 |
extracellular region |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005125 |
cytokine activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 Karpala, AJ et al. (2008) Molecular cloning, expression, and characterization of chicken IFN -lambda. J. Interferon Cytokine Res. 28 341-50 PubMed GONUTS page
- ↑ Lu, Y et al. (2009) Expression profiles of genes in Toll-like receptor-mediated signaling of broilers infected with Clostridium perfringens. Clin. Vaccine Immunol. 16 1639-47 PubMed GONUTS page
- ↑ 3.00 3.01 3.02 3.03 3.04 3.05 3.06 3.07 3.08 3.09 3.10 3.11 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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