GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
CHICK:GATA5
Contents
Species (Taxon ID) | Gallus gallus (Chicken). (9031) | |
Gene Name(s) | GATA5 | |
Protein Name(s) | Transcription factor GATA-5
GATA-binding factor 5 | |
External Links | ||
UniProt | P43692 | |
EMBL | U11888 | |
PIR | I50702 | |
UniGene | Gga.2081 | |
ProteinModelPortal | P43692 | |
SMR | P43692 | |
STRING | 9031.ENSGALP00000008569 | |
PaxDb | P43692 | |
eggNOG | COG5641 | |
HOGENOM | HOG000047700 | |
HOVERGEN | HBG051703 | |
InParanoid | P43692 | |
PhylomeDB | P43692 | |
NextBio | 20816433 | |
PRO | PR:P43692 | |
Proteomes | UP000000539 | |
GO | GO:0005634 GO:0001158 GO:0003700 GO:0008270 GO:0045944 GO:0006351 | |
Gene3D | 3.30.50.10 | |
InterPro | IPR008013 IPR028372 IPR016375 IPR000679 IPR013088 | |
PANTHER | PTHR10071:SF148 | |
Pfam | PF00320 PF05349 | |
PIRSF | PIRSF003028 | |
PRINTS | PR00619 | |
SMART | SM00401 | |
PROSITE | PS00344 PS50114 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
part_of |
GO:0005634 |
nucleus |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0001158 |
enhancer sequence-specific DNA binding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0072359 |
circulatory system development |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:109497 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0048738 |
cardiac muscle tissue development |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002560179 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0003117 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0003117 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000978 |
RNA polymerase II proximal promoter sequence-specific DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:107516 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006357 |
regulation of transcription by RNA polymerase II |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0000981 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0008270 |
zinc ion binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000679 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Lee, KH et al. (2004) SMAD-mediated modulation of YY1 activity regulates the BMP response and cardiac-specific expression of a GATA4/5/6-dependent chick Nkx2.5 enhancer. Development 131 4709-23 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
c
d
r