ARATH:SDN1

Species (Taxon ID)	Arabidopsis thaliana (Mouse-ear cress). (3702)
Gene Name(s)	SDN1
Protein Name(s)	Small RNA degrading nuclease 1
External Links
UniProt	A3KPE8
EMBL	AL132978 CP002686 BT030315
PIR	T45863
RefSeq	NP_190579.2
UniGene	At.35533
ProteinModelPortal	A3KPE8
SMR	A3KPE8
STRING	3702.AT3G50100.1
iPTMnet	A3KPE8
PaxDb	A3KPE8
PRIDE	A3KPE8
EnsemblPlants	AT3G50100.1
GeneID	824172
Gramene	AT3G50100.1
KEGG	ath:AT3G50100
TAIR	AT3G50100
eggNOG	KOG2248 COG0847
HOGENOM	HOG000083886
InParanoid	A3KPE8
KO	K14570
OMA	CKSILGY
PhylomeDB	A3KPE8
PRO	PR:A3KPE8
Proteomes	UP000006548
ExpressionAtlas	A3KPE8
GO	GO:0005634 GO:0008408 GO:0003676 GO:0000166 GO:0010587 GO:0090305
Gene3D	3.30.420.10 3.30.70.330
InterPro	IPR013520 IPR012677 IPR012337
Pfam	PF00929
SMART	SM00479
SUPFAM	SSF53098 SSF54928

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Extension	Notes	Status
	GO:0000175	3'-5'-exoribonuclease activity	PMID:18787168	ECO:0000314			F		Figures 1 and 2 show that SDN1 has exoribonuclease activity and its substrates are single stranded miRNAs in arabidopsis.	complete CACAO 12209
enables	GO:0044748	3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing		ECO:0000314	direct assay evidence used in manual assertion		F		Seeded From UniProt	complete
enables	GO:0035198	miRNA binding		ECO:0000353	physical interaction evidence used in manual assertion	AGI_LocusCode:AT1G48410	F		Seeded From UniProt	complete
involved_in	GO:0010587	miRNA catabolic process	PMID:18787168	ECO:0000314	direct assay evidence used in manual assertion		P		Seeded From UniProt	complete
enables	GO:0008408	3'-5' exonuclease activity	PMID:18787168	ECO:0000314	direct assay evidence used in manual assertion		F		Seeded From UniProt	complete
involved_in	GO:0044747	mature miRNA 3'-end processing	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0044748	P		Seeded From UniProt	complete
involved_in	GO:0090305	nucleic acid phosphodiester bond hydrolysis	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0008408	P		Seeded From UniProt	complete
involved_in	GO:0090305	nucleic acid phosphodiester bond hydrolysis	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0004527	P		Seeded From UniProt	complete
involved_in	GO:0090305	nucleic acid phosphodiester bond hydrolysis	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0004518	P		Seeded From UniProt	complete
enables	GO:0003676	nucleic acid binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR035979 InterPro:IPR036397	F		Seeded From UniProt	complete
enables	GO:0016787	hydrolase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0378	F		Seeded From UniProt	complete
enables	GO:0004527	exonuclease activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0269	F		Seeded From UniProt	complete
enables	GO:0004518	nuclease activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0540	F		Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C		Seeded From UniProt	complete
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References

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