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PSEAE:FABY

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Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

public

GO:0033818

beta-ketoacyl-acyl-carrier-protein synthase III activity

PMID:22753059

ECO:0000314

F

Figure 8a: NADPH consumption of PA5174 and E. coli FabH were similar

complete
CACAO 9288

public

GO:0006633

fatty acid biosynthetic process

PMID:22753059

ECO:0000315

P

Figure 4B: The PA5174 incapacitated mutant displayed a lower percent incorporated label than the wild type.

complete
CACAO 9486

public

GO:0009372

quorum sensing

PMID:22753059

ECO:0000315

P

Figure 5A: Production of acyl-homoserine lactone decreased in PA5174 incapacitated mutants and increased in PA5174 complemented mutants (TMT41)

Figure 5B: Wild-type strain and TMT41 mutants produced halos indicating ion-pairing complexation between methylene blue dye, cetyltrimethylammonium bromide, and secreted rhamnolipids but mutant with nonfunctional PA5174 did not.

Figure 5C: Rhamnose levels were higher in TMT41 mutant than in wild type. Rhamnose levels were also lower in mutant with nonfunctional PA5174 than in wild type.

complete
CACAO 9492

public

GO:0019290

siderophore biosynthetic process

PMID:22753059

ECO:0000315

P

Figure 7: Wild-type, mutant strain without PA5174, PA5174 back-complemented with plasmid, and FabH-complemented strain were streaked on LB-chrome azurol S indicator plates. Only the PA5174 deficient strain displayed no signs of iron sequestration (no yellow border around bacteria).

complete
CACAO 9514

public

GO:0009245

lipid A biosynthetic process

PMID:24145528

ECO:0000315

P

Figure 4: Spectra for wild-type and fabY-complemented mutant strain were similar, spectrum for fabY deficient strain was different

Table 2: almost every lipid A species in fabY deficient strain was modified with L-Ara4N

complete
CACAO 9515

protected

involved_in

GO:0009245

lipid A biosynthetic process

PMID:24145528

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

protected

involved_in

GO:0019290

siderophore biosynthetic process

PMID:22753059

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

protected

involved_in

GO:0009372

quorum sensing

PMID:22753059

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

protected

involved_in

GO:0006633

fatty acid biosynthetic process

PMID:22753059

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

protected

enables

GO:0033818

beta-ketoacyl-acyl-carrier-protein synthase III activity

PMID:22753059

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

protected

enables

GO:0003824

catalytic activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR016039

F

Seeded From UniProt

complete

protected

enables

GO:0033818

beta-ketoacyl-acyl-carrier-protein synthase III activity

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:2.3.1.180

F

Seeded From UniProt

complete

protected

enables

GO:0016746

transferase activity, transferring acyl groups

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0012

F

Seeded From UniProt

complete

protected

involved_in

GO:0006631

fatty acid metabolic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0276

P

Seeded From UniProt

complete

protected

involved_in

GO:0006633

fatty acid biosynthetic process

GO_REF:0000037
GO_REF:0000041

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0275
UniPathway:UPA00094

P

Seeded From UniProt

complete

protected

involved_in

GO:0006629

lipid metabolic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0443

P

Seeded From UniProt

complete

protected

enables

GO:0016740

transferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0808

F

Seeded From UniProt

complete




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