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WB:rab-5
Contents |
| Species (Taxon ID) | Caenorhabditis elegans (nematode) (taxon:6239) | |
| Gene Name(s) | rab-5 ( synonyms: F26H9.6 ) | |
| Protein Name(s) | No Information Provided. | |
| External Links | ||
| WB | WBGene00004268 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0000003 |
reproduction |
WB_REF:WBPaper00038381 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00085387 |
P |
From WB |
||
| GO:0000910 |
cytokinesis |
WB_REF:WBPaper00028972 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00077457 |
P |
From WB |
||
| GO:0000910 |
cytokinesis |
WB_REF:WBPaper00028972 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00077457 |
P |
From WB |
||
| GO:0002119 |
nematode larval development |
WB_REF:WBPaper00004402 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00000037 |
P |
From WB |
||
| GO:0002119 |
nematode larval development |
WB_REF:WBPaper00006395 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00025264 |
P |
From WB |
||
| GO:0002119 |
nematode larval development |
WB_REF:WBPaper00006395 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00025265 |
P |
From WB |
||
| GO:0002119 |
nematode larval development |
WB_REF:WBPaper00024497 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00031478 |
P |
From WB |
||
| GO:0002119 |
nematode larval development |
WB_REF:WBPaper00026667 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00060682 |
P |
From WB |
||
| GO:0002119 |
nematode larval development |
WB_REF:WBPaper00026667 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00060683 |
P |
From WB |
||
| GO:0003924 |
GTPase activity |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR000795 |
F |
From WB |
|||
| GO:0003924 |
GTPase activity |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR002041 |
F |
From WB |
|||
| GO:0003924 |
GTPase activity |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR020849 |
F |
From WB |
|||
| GO:0003924 |
GTPase activity |
WB_REF:WBPaper00015788 |
ISS: Inferred from Sequence or Structural Similarity |
F |
From WB |
|||
| GO:0003924 |
GTPase activity |
WB_REF:WBPaper00036262 |
IDA: Inferred from Direct Assay |
F |
From WB |
|||
| GO:0005525 |
GTP binding |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR000795 |
F |
From WB |
|||
| GO:0005525 |
GTP binding |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR001806 |
F |
From WB |
|||
| GO:0005525 |
GTP binding |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR002041 |
F |
From WB |
|||
| GO:0005525 |
GTP binding |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR003578 |
F |
From WB |
|||
| GO:0005525 |
GTP binding |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR003579 |
F |
From WB |
|||
| GO:0005525 |
GTP binding |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR005225 |
F |
From WB |
|||
| GO:0005525 |
GTP binding |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR006689 |
F |
From WB |
|||
| GO:0005525 |
GTP binding |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR006762 |
F |
From WB |
|||
| GO:0005525 |
GTP binding |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR013684 |
F |
From WB |
|||
| GO:0005525 |
GTP binding |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR020849 |
F |
From WB |
|||
| GO:0005622 |
intracellular |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR003578 |
C |
From WB |
|||
| GO:0005622 |
intracellular |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR013684 |
C |
From WB |
|||
| GO:0005634 |
nucleus |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR006762 |
C |
From WB |
|||
| GO:0005737 |
cytoplasm |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR006762 |
C |
From WB |
|||
| GO:0005768 |
endosome |
WB_REF:WBPaper00025193 |
IDA: Inferred from Direct Assay |
C |
From WB |
|||
| GO:0005769 |
early endosome |
WB_REF:WBPaper00027018 |
IDA: Inferred from Direct Assay |
C |
From WB |
|||
| GO:0005938 |
cell cortex |
WB_REF:WBPaper00025193 |
IDA: Inferred from Direct Assay |
C |
From WB |
|||
| GO:0006184 |
GTP catabolic process |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR002041 |
P |
From WB |
|||
| GO:0006184 |
GTP catabolic process |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR020849 |
P |
From WB |
|||
| GO:0006184 |
GTP catabolic process |
WB_REF:WBPaper00036262 |
IDA: Inferred from Direct Assay |
P |
From WB |
|||
| GO:0006886 |
intracellular protein transport |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR002041 |
P |
From WB |
|||
| GO:0006898 |
receptor-mediated endocytosis |
WB_REF:WBPaper00003831 |
IMP: Inferred from Mutant Phenotype |
P |
From WB |
|||
| GO:0006898 |
receptor-mediated endocytosis |
WB_REF:WBPaper00028972 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00077457 |
P |
From WB |
||
| GO:0006898 |
receptor-mediated endocytosis |
WB_REF:WBPaper00030951 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00071038 |
P |
From WB |
||
| GO:0006913 |
nucleocytoplasmic transport |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR002041 |
P |
From WB |
|||
| GO:0006915 |
apoptotic process |
WB_REF:WBPaper00038381 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00085387 |
P |
From WB |
||
| GO:0006915 |
apoptotic process |
WB_REF:WBPaper00038381 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00085387 |
P |
From WB |
||
| GO:0006952 |
defense response |
WB_REF:WBPaper00038144 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00085160 |
P |
From WB |
||
| GO:0007028 |
cytoplasm organization |
WB_REF:WBPaper00004402 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00000037 |
P |
From WB |
||
| GO:0007028 |
cytoplasm organization |
WB_REF:WBPaper00004811 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00081348 |
P |
From WB |
||
| GO:0007165 |
signal transduction |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR002041 |
P |
From WB |
|||
| GO:0007165 |
signal transduction |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR020849 |
P |
From WB |
|||
| GO:0007264 |
small GTPase mediated signal transduction |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR001806 |
P |
From WB |
|||
| GO:0007264 |
small GTPase mediated signal transduction |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR003578 |
P |
From WB |
|||
| GO:0007264 |
small GTPase mediated signal transduction |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR003579 |
P |
From WB |
|||
| GO:0007264 |
small GTPase mediated signal transduction |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR013684 |
P |
From WB |
|||
| GO:0008105 |
asymmetric protein localization |
WB_REF:WBPaper00018615 |
IMP: Inferred from Mutant Phenotype |
P |
From WB |
|||
| GO:0008219 |
cell death |
WB_REF:WBPaper00025087 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00061378 |
P |
From WB |
||
| GO:0008340 |
determination of adult lifespan |
WB_REF:WBPaper00035230 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00082011 |
P |
From WB |
||
| GO:0008340 |
determination of adult lifespan |
WB_REF:WBPaper00035230 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00082012 |
P |
From WB |
||
| GO:0008340 |
determination of adult lifespan |
WB_REF:WBPaper00035230 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00082013 |
P |
From WB |
||
| GO:0008340 |
determination of adult lifespan |
WB_REF:WBPaper00035230 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00082014 |
P |
From WB |
||
| GO:0009306 |
protein secretion |
WB_REF:WBPaper00027122 |
IMP: Inferred from Mutant Phenotype |
P |
From WB |
|||
| GO:0009306 |
protein secretion |
WB_REF:WBPaper00027122 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00083343 |
P |
From WB |
||
| GO:0009792 |
embryo development ending in birth or egg hatching |
WB_REF:WBPaper00003831 |
IMP: Inferred from Mutant Phenotype |
P |
From WB |
|||
| GO:0009792 |
embryo development ending in birth or egg hatching |
WB_REF:WBPaper00004402 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00000037 |
P |
From WB |
||
| GO:0009792 |
embryo development ending in birth or egg hatching |
WB_REF:WBPaper00006395 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00025264 |
P |
From WB |
||
| GO:0009792 |
embryo development ending in birth or egg hatching |
WB_REF:WBPaper00006395 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00025265 |
P |
From WB |
||
| GO:0009792 |
embryo development ending in birth or egg hatching |
WB_REF:WBPaper00024200 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00080617 |
P |
From WB |
||
| GO:0009792 |
embryo development ending in birth or egg hatching |
WB_REF:WBPaper00025054 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00045709 |
P |
From WB |
||
| GO:0009792 |
embryo development ending in birth or egg hatching |
WB_REF:WBPaper00028972 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00077457 |
P |
From WB |
||
| GO:0015031 |
protein transport |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR003579 |
P |
From WB |
|||
| GO:0016020 |
membrane |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR020849 |
C |
From WB |
|||
| GO:0018996 |
molting cycle, collagen and cuticulin-based cuticle |
WB_REF:WBPaper00026763 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00066841 |
P |
From WB |
||
| GO:0030163 |
protein catabolic process |
WB_REF:WBPaper00027612 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00083353 |
P |
From WB |
||
| GO:0032794 |
GTPase activating protein binding |
WB_REF:WBPaper00025193 |
IPI: Inferred from Physical Interaction |
WB:WBGene00004377 |
F |
From WB |
||
| GO:0040007 |
growth |
WB_REF:WBPaper00006395 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00025264 |
P |
From WB |
||
| GO:0040007 |
growth |
WB_REF:WBPaper00006395 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00025265 |
P |
From WB |
||
| GO:0045335 |
phagocytic vesicle |
WB_REF:WBPaper00037661 |
IDA: Inferred from Direct Assay |
C |
From WB |
|||
| GO:0051301 |
cell division |
WB_REF:WBPaper00028972 |
IMP: Inferred from Mutant Phenotype |
WB:WBRNAi00077457 |
P |
From WB |
||
| GO:0090386 |
phagosome maturation involved in apoptotic cell clearance |
WB_REF:WBPaper00037661 |
IMP: Inferred from Mutant Phenotype |
P |
From WB |
| ||
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Green RA et al. (2011) A high-resolution C. elegans essential gene network based on phenotypic profiling of a complex tissue. Cell 145: 470-82 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 Poteryaev D et al. (2007) Caenorhabditis elegans SAND-1 is essential for RAB-7 function in endosomal traffic. EMBO J 26: 301-12 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 Fraser AG et al. (2000) Functional genomic analysis of C. elegans chromosome I by systematic RNA interference. Nature 408: 325-30 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 Simmer F et al. (2003) Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals novel gene functions. PLoS Biol 1: E12 PubMed GONUTS page
- ↑ Rual JF et al. (2004) Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library. Genome Res 14: 2162-8 PubMed GONUTS page
- ↑ 6.0 6.1 Sieburth D et al. (2005) Systematic analysis of genes required for synapse structure and function. Nature 436: 510-7 PubMed GONUTS page
- ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 7.18 7.19 7.20 7.21 7.22 7.23 7.24 7.25 7.26 7.27 7.28 Mulder NJ et al. (2003) The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res 31: 315-8 PubMed GONUTS page
- ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 8.11 8.12 8.13 8.14 8.15 8.16 8.17 8.18 8.19 8.20 8.21 8.22 8.23 8.24 8.25 8.26 8.27 8.28 Camon E et al. (2003) The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. Genome Res 13: 662-72 PubMed GONUTS page
- ↑ 9.0 9.1 Chotard L et al. (2010) TBC-2 regulates RAB-5/RAB-7-mediated endosomal trafficking in Caenorhabditis elegans. Mol Biol Cell 21: 2285-96 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 Sato M et al. (2005) Caenorhabditis elegans RME-6 is a novel regulator of RAB-5 at the clathrin-coated pit. Nat Cell Biol 7: 559-69 PubMed GONUTS page
- ↑ Chen CC et al. (2006) RAB-10 is required for endocytic recycling in the Caenorhabditis elegans intestine. Mol Biol Cell 17: 1286-97 PubMed GONUTS page
- ↑ 12.0 12.1 Grant B & Hirsh D (1999) Receptor-mediated endocytosis in the Caenorhabditis elegans oocyte. Mol Biol Cell 10: 4311-26 PubMed GONUTS page
- ↑ Balklava Z et al. (2007) Genome-wide analysis identifies a general requirement for polarity proteins in endocytic traffic. Nat Cell Biol 9: 1066-73 PubMed GONUTS page
- ↑ Los FC et al. (2011) RAB-5- and RAB-11-dependent vesicle-trafficking pathways are required for plasma membrane repair after attack by bacterial pore-forming toxin. Cell Host Microbe 9: 147-57 PubMed GONUTS page
- ↑ Zipperlen P et al. (2001) Roles for 147 embryonic lethal genes on C.elegans chromosome I identified by RNA interference and video microscopy. EMBO J 20: 3984-92 PubMed GONUTS page
- ↑ Lackner MR et al. (2005) Chemical genetics identifies Rab geranylgeranyl transferase as an apoptotic target of farnesyl transferase inhibitors. Cancer Cell 7: 325-36 PubMed GONUTS page
- ↑ 17.0 17.1 17.2 17.3 Park SK et al. (2010) Life-span extension by dietary restriction is mediated by NLP-7 signaling and coelomocyte endocytosis in C. elegans. FASEB J 24: 383-92 PubMed GONUTS page
- ↑ 18.0 18.1 Kamikura DM & Cooper JA (2006) Clathrin interaction and subcellular localization of Ce-DAB-1, an adaptor for protein secretion in Caenorhabditis elegans. Traffic 7: 324-36 PubMed GONUTS page
- ↑ Skop AR et al. (2004) Dissection of the mammalian midbody proteome reveals conserved cytokinesis mechanisms. Science 305: 61-6 PubMed GONUTS page
- ↑ Sönnichsen B et al. (2005) Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans. Nature 434: 462-9 PubMed GONUTS page
- ↑ Frand AR et al. (2005) Functional genomic analysis of C. elegans molting. PLoS Biol 3: e312 PubMed GONUTS page
- ↑ Sato K et al. (2006) Dynamic regulation of caveolin-1 trafficking in the germ line and embryo of Caenorhabditis elegans. Mol Biol Cell 17: 3085-94 PubMed GONUTS page
- ↑ 23.0 23.1 Guo P et al. (2010) Sequential action of Caenorhabditis elegans Rab GTPases regulates phagolysosome formation during apoptotic cell degradation. Proc Natl Acad Sci U S A 107: 18016-21 PubMed GONUTS page