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WB:rab-5

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Contents

Species (Taxon ID) Caenorhabditis elegans (nematode) (taxon:6239)
Gene Name(s) rab-5 ( synonyms: F26H9.6 )
Protein Name(s) No Information Provided.
External Links
WB WBGene00004268

Annotations

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000003

reproduction

WB_REF:WBPaper00038381
PMID:21529718[1]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00085387
WB:WBPhenotype:0000688

P

From WB

GO:0000910

cytokinesis

WB_REF:WBPaper00028972
PMID:17203072[2]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00077457
WB:WBPhenotype:0001018

P

From WB

GO:0000910

cytokinesis

WB_REF:WBPaper00028972
PMID:17203072[2]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00077457
WB:WBPhenotype:0001143

P

From WB

GO:0002119

nematode larval development

WB_REF:WBPaper00004402
PMID:11099033[3]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00000037
WB:WBPhenotype:0000054

P

From WB

GO:0002119

nematode larval development

WB_REF:WBPaper00006395
PMID:14551910[4]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00025264
WB:WBPhenotype:0000059

P

From WB

GO:0002119

nematode larval development

WB_REF:WBPaper00006395
PMID:14551910[4]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00025265
WB:WBPhenotype:0000059

P

From WB

GO:0002119

nematode larval development

WB_REF:WBPaper00024497
PMID:15489339[5]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00031478
WB:WBPhenotype:0000054

P

From WB

GO:0002119

nematode larval development

WB_REF:WBPaper00026667
PMID:16049479[6]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00060682
WB:WBPhenotype:0000054

P

From WB

GO:0002119

nematode larval development

WB_REF:WBPaper00026667
PMID:16049479[6]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00060683
WB:WBPhenotype:0000054

P

From WB

GO:0003924

GTPase activity

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR000795

F

From WB

GO:0003924

GTPase activity

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR002041

F

From WB

GO:0003924

GTPase activity

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR020849

F

From WB

GO:0003924

GTPase activity

WB_REF:WBPaper00015788

ISS: Inferred from Sequence or Structural Similarity

F

From WB

GO:0003924

GTPase activity

WB_REF:WBPaper00036262
PMID:20462958[9]

IDA: Inferred from Direct Assay

F

From WB

GO:0005525

GTP binding

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR000795

F

From WB

GO:0005525

GTP binding

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR001806

F

From WB

GO:0005525

GTP binding

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR002041

F

From WB

GO:0005525

GTP binding

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR003578

F

From WB

GO:0005525

GTP binding

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR003579

F

From WB

GO:0005525

GTP binding

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR005225

F

From WB

GO:0005525

GTP binding

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR006689

F

From WB

GO:0005525

GTP binding

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR006762

F

From WB

GO:0005525

GTP binding

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR013684

F

From WB

GO:0005525

GTP binding

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR020849

F

From WB

GO:0005622

intracellular

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR003578

C

From WB

GO:0005622

intracellular

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR013684

C

From WB

GO:0005634

nucleus

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR006762

C

From WB

GO:0005737

cytoplasm

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR006762

C

From WB

GO:0005768

endosome

WB_REF:WBPaper00025193
PMID:15895077[10]

IDA: Inferred from Direct Assay

C

From WB

GO:0005769

early endosome

WB_REF:WBPaper00027018
PMID:16394106[11]

IDA: Inferred from Direct Assay

C

From WB

GO:0005938

cell cortex

WB_REF:WBPaper00025193
PMID:15895077[10]

IDA: Inferred from Direct Assay

C

From WB

GO:0006184

GTP catabolic process

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR002041

P

From WB

GO:0006184

GTP catabolic process

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR020849

P

From WB

GO:0006184

GTP catabolic process

WB_REF:WBPaper00036262
PMID:20462958[9]

IDA: Inferred from Direct Assay

P

From WB

GO:0006886

intracellular protein transport

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR002041

P

From WB

GO:0006898

receptor-mediated endocytosis

WB_REF:WBPaper00003831
PMID:10588660[12]

IMP: Inferred from Mutant Phenotype

P

From WB

GO:0006898

receptor-mediated endocytosis

WB_REF:WBPaper00028972
PMID:17203072[2]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00077457
WB:WBPhenotype:0001425

P

From WB

GO:0006898

receptor-mediated endocytosis

WB_REF:WBPaper00030951
PMID:17704769[13]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00071038
WB:WBPhenotype:0001425

P

From WB

GO:0006913

nucleocytoplasmic transport

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR002041

P

From WB

GO:0006915

apoptotic process

WB_REF:WBPaper00038381
PMID:21529718[1]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00085387
WB:WBPhenotype:0000183

P

From WB

GO:0006915

apoptotic process

WB_REF:WBPaper00038381
PMID:21529718[1]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00085387
WB:WBPhenotype:0000730

P

From WB

GO:0006952

defense response

WB_REF:WBPaper00038144
PMID:21320697[14]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00085160
WB:WBPhenotype:0001013

P

From WB

GO:0007028

cytoplasm organization

WB_REF:WBPaper00004402
PMID:11099033[3]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00000037
WB:WBPhenotype:0000769

P

From WB

GO:0007028

cytoplasm organization

WB_REF:WBPaper00004811
PMID:11483502[15]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00081348
WB:WBPhenotype:0000769

P

From WB

GO:0007165

signal transduction

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR002041

P

From WB

GO:0007165

signal transduction

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR020849

P

From WB

GO:0007264

small GTPase mediated signal transduction

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR001806

P

From WB

GO:0007264

small GTPase mediated signal transduction

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR003578

P

From WB

GO:0007264

small GTPase mediated signal transduction

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR003579

P

From WB

GO:0007264

small GTPase mediated signal transduction

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR013684

P

From WB

GO:0008105

asymmetric protein localization

WB_REF:WBPaper00018615

IMP: Inferred from Mutant Phenotype

P

From WB

GO:0008219

cell death

WB_REF:WBPaper00025087
PMID:15837622[16]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00061378
WB:WBPhenotype:0000729

P

From WB

GO:0008340

determination of adult lifespan

WB_REF:WBPaper00035230
PMID:19783783[17]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00082011
WB:WBPhenotype:0001171

P

From WB

GO:0008340

determination of adult lifespan

WB_REF:WBPaper00035230
PMID:19783783[17]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00082012
WB:WBPhenotype:0001171

P

From WB

GO:0008340

determination of adult lifespan

WB_REF:WBPaper00035230
PMID:19783783[17]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00082013
WB:WBPhenotype:0001171

P

From WB

GO:0008340

determination of adult lifespan

WB_REF:WBPaper00035230
PMID:19783783[17]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00082014
WB:WBPhenotype:0001171

P

From WB

GO:0009306

protein secretion

WB_REF:WBPaper00027122
PMID:16497226[18]

IMP: Inferred from Mutant Phenotype

P

From WB

GO:0009306

protein secretion

WB_REF:WBPaper00027122
PMID:16497226[18]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00083343
WB:WBPhenotype:0000724

P

From WB

GO:0009792

embryo development ending in birth or egg hatching

WB_REF:WBPaper00003831
PMID:10588660[12]

IMP: Inferred from Mutant Phenotype

P

From WB

GO:0009792

embryo development ending in birth or egg hatching

WB_REF:WBPaper00004402
PMID:11099033[3]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00000037
WB:WBPhenotype:0000050

P

From WB

GO:0009792

embryo development ending in birth or egg hatching

WB_REF:WBPaper00006395
PMID:14551910[4]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00025264
WB:WBPhenotype:0000050

P

From WB

GO:0009792

embryo development ending in birth or egg hatching

WB_REF:WBPaper00006395
PMID:14551910[4]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00025265
WB:WBPhenotype:0000050

P

From WB

GO:0009792

embryo development ending in birth or egg hatching

WB_REF:WBPaper00024200
PMID:15166316[19]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00080617
WB:WBPhenotype:0000050

P

From WB

GO:0009792

embryo development ending in birth or egg hatching

WB_REF:WBPaper00025054
PMID:15791247[20]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00045709
WB:WBPhenotype:0000050

P

From WB

GO:0009792

embryo development ending in birth or egg hatching

WB_REF:WBPaper00028972
PMID:17203072[2]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00077457
WB:WBPhenotype:0000050

P

From WB

GO:0015031

protein transport

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR003579

P

From WB

GO:0016020

membrane

PMID:12520011[7]
PMID:12654719[8]

IEA: Inferred from Electronic Annotation

INTERPRO:IPR020849

C

From WB

GO:0018996

molting cycle, collagen and cuticulin-based cuticle

WB_REF:WBPaper00026763
PMID:16122351[21]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00066841
WB:WBPhenotype:0000638

P

From WB

GO:0030163

protein catabolic process

WB_REF:WBPaper00027612
PMID:16672374[22]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00083353
WB:WBPhenotype:0001645

P

From WB

GO:0032794

GTPase activating protein binding

WB_REF:WBPaper00025193
PMID:15895077[10]

IPI: Inferred from Physical Interaction

WB:WBGene00004377

F

From WB

GO:0040007

growth

WB_REF:WBPaper00006395
PMID:14551910[4]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00025264
WB:WBPhenotype:0000059

P

From WB

GO:0040007

growth

WB_REF:WBPaper00006395
PMID:14551910[4]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00025265
WB:WBPhenotype:0000059

P

From WB

GO:0045335

phagocytic vesicle

WB_REF:WBPaper00037661
PMID:20921409[23]

IDA: Inferred from Direct Assay

C

From WB

GO:0051301

cell division

WB_REF:WBPaper00028972
PMID:17203072[2]

IMP: Inferred from Mutant Phenotype

WB:WBRNAi00077457
WB:WBPhenotype:0001143

P

From WB

GO:0090386

phagosome maturation involved in apoptotic cell clearance

WB_REF:WBPaper00037661
PMID:20921409[23]

IMP: Inferred from Mutant Phenotype

P

From WB


Notes

References

See Help:References for how to manage references in GONUTS.
  1. 1.0 1.1 1.2 Green RA et al. (2011) A high-resolution C. elegans essential gene network based on phenotypic profiling of a complex tissue. Cell 145: 470-82 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 Poteryaev D et al. (2007) Caenorhabditis elegans SAND-1 is essential for RAB-7 function in endosomal traffic. EMBO J 26: 301-12 PubMed GONUTS page
  3. 3.0 3.1 3.2 Fraser AG et al. (2000) Functional genomic analysis of C. elegans chromosome I by systematic RNA interference. Nature 408: 325-30 PubMed GONUTS page
  4. 4.0 4.1 4.2 4.3 4.4 4.5 Simmer F et al. (2003) Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals novel gene functions. PLoS Biol 1: E12 PubMed GONUTS page
  5. Rual JF et al. (2004) Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library. Genome Res 14: 2162-8 PubMed GONUTS page
  6. 6.0 6.1 Sieburth D et al. (2005) Systematic analysis of genes required for synapse structure and function. Nature 436: 510-7 PubMed GONUTS page
  7. 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 7.18 7.19 7.20 7.21 7.22 7.23 7.24 7.25 7.26 7.27 7.28 Mulder NJ et al. (2003) The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res 31: 315-8 PubMed GONUTS page
  8. 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 8.11 8.12 8.13 8.14 8.15 8.16 8.17 8.18 8.19 8.20 8.21 8.22 8.23 8.24 8.25 8.26 8.27 8.28 Camon E et al. (2003) The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. Genome Res 13: 662-72 PubMed GONUTS page
  9. 9.0 9.1 Chotard L et al. (2010) TBC-2 regulates RAB-5/RAB-7-mediated endosomal trafficking in Caenorhabditis elegans. Mol Biol Cell 21: 2285-96 PubMed GONUTS page
  10. 10.0 10.1 10.2 Sato M et al. (2005) Caenorhabditis elegans RME-6 is a novel regulator of RAB-5 at the clathrin-coated pit. Nat Cell Biol 7: 559-69 PubMed GONUTS page
  11. Chen CC et al. (2006) RAB-10 is required for endocytic recycling in the Caenorhabditis elegans intestine. Mol Biol Cell 17: 1286-97 PubMed GONUTS page
  12. 12.0 12.1 Grant B & Hirsh D (1999) Receptor-mediated endocytosis in the Caenorhabditis elegans oocyte. Mol Biol Cell 10: 4311-26 PubMed GONUTS page
  13. Balklava Z et al. (2007) Genome-wide analysis identifies a general requirement for polarity proteins in endocytic traffic. Nat Cell Biol 9: 1066-73 PubMed GONUTS page
  14. Los FC et al. (2011) RAB-5- and RAB-11-dependent vesicle-trafficking pathways are required for plasma membrane repair after attack by bacterial pore-forming toxin. Cell Host Microbe 9: 147-57 PubMed GONUTS page
  15. Zipperlen P et al. (2001) Roles for 147 embryonic lethal genes on C.elegans chromosome I identified by RNA interference and video microscopy. EMBO J 20: 3984-92 PubMed GONUTS page
  16. Lackner MR et al. (2005) Chemical genetics identifies Rab geranylgeranyl transferase as an apoptotic target of farnesyl transferase inhibitors. Cancer Cell 7: 325-36 PubMed GONUTS page
  17. 17.0 17.1 17.2 17.3 Park SK et al. (2010) Life-span extension by dietary restriction is mediated by NLP-7 signaling and coelomocyte endocytosis in C. elegans. FASEB J 24: 383-92 PubMed GONUTS page
  18. 18.0 18.1 Kamikura DM & Cooper JA (2006) Clathrin interaction and subcellular localization of Ce-DAB-1, an adaptor for protein secretion in Caenorhabditis elegans. Traffic 7: 324-36 PubMed GONUTS page
  19. Skop AR et al. (2004) Dissection of the mammalian midbody proteome reveals conserved cytokinesis mechanisms. Science 305: 61-6 PubMed GONUTS page
  20. Sönnichsen B et al. (2005) Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans. Nature 434: 462-9 PubMed GONUTS page
  21. Frand AR et al. (2005) Functional genomic analysis of C. elegans molting. PLoS Biol 3: e312 PubMed GONUTS page
  22. Sato K et al. (2006) Dynamic regulation of caveolin-1 trafficking in the germ line and embryo of Caenorhabditis elegans. Mol Biol Cell 17: 3085-94 PubMed GONUTS page
  23. 23.0 23.1 Guo P et al. (2010) Sequential action of Caenorhabditis elegans Rab GTPases regulates phagolysosome formation during apoptotic cell degradation. Proc Natl Acad Sci U S A 107: 18016-21 PubMed GONUTS page
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