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VIBCM:C3LP17

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Species (Taxon ID) Vibrio cholerae serotype O1 (strain M66-2). (579112)
Gene Name(s) No Information Provided.
Protein Name(s) RNA polymerase sigma factor FliA (ECO:0000256 with HAMAP-Rule:MF_00962)

RNA polymerase sigma factor for flagellar operon (ECO:0000256 with HAMAP-Rule:MF_00962) Sigma F (ECO:0000256 with HAMAP-Rule:MF_00962) Sigma-28 (ECO:0000256 with HAMAP-Rule:MF_00962)

External Links
UniProt C3LP17
EMBL CP001233
RefSeq YP_002810744.1
ProteinModelPortal C3LP17
STRING 579112.VCM66_1990
EnsemblBacteria ACP06293
GeneID 7773254
KEGG vcm:VCM66_1990
PATRIC 20067710
eggNOG COG1191
HOGENOM HOG000270271
KO K02405
OMA MPKGIQK
OrthoDB EOG661H9F
BioCyc VCHO579112:GJAW-2055-MONOMER
Proteomes UP000001217
GO GO:0005737
GO:0003677
GO:0003899
GO:0003700
GO:0016987
GO:0001123
Gene3D 1.10.10.10
HAMAP MF_00962
InterPro IPR014284
IPR000943
IPR007627
IPR007624
IPR007630
IPR012845
IPR013325
IPR013324
IPR028617
IPR011991
Pfam PF04542
PF04539
PF04545
PRINTS PR00046
SUPFAM SSF88659
SSF88946
TIGRFAMs TIGR02479
TIGR02937

Annotations

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0001123

transcription initiation from bacterial-type RNA polymerase promoter

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00962

P

Seeded From UniProt

complete

GO:0003677

DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000943
InterPro:IPR007624
InterPro:IPR007627
InterPro:IPR007630
InterPro:IPR012845
InterPro:IPR013324
InterPro:IPR013325
InterPro:IPR014284
InterPro:IPR016263
InterPro:IPR028617

F

Seeded From UniProt

complete

GO:0003677

DNA binding

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00962

F

Seeded From UniProt

complete

GO:0003677

DNA binding

GO_REF:0000038

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

GO:0003700

transcription factor activity, sequence-specific DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000943
InterPro:IPR007624
InterPro:IPR007627
InterPro:IPR007630
InterPro:IPR013324
InterPro:IPR013325
InterPro:IPR014284

F

Seeded From UniProt

complete

GO:0003899

DNA-directed RNA polymerase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012845
InterPro:IPR028617

F

Seeded From UniProt

complete

GO:0005737

cytoplasm

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00962

C

Seeded From UniProt

complete

GO:0005737

cytoplasm

GO_REF:0000038

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0963

C

Seeded From UniProt

complete

GO:0005737

cytoplasm

GO_REF:0000040

IEA: Inferred from Electronic Annotation

UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

GO:0006351

transcription, DNA-templated

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016263

P

Seeded From UniProt

complete

GO:0006351

transcription, DNA-templated

GO_REF:0000038

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0804

P

Seeded From UniProt

complete

GO:0006352

DNA-templated transcription, initiation

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000943
InterPro:IPR007624
InterPro:IPR007627
InterPro:IPR007630
InterPro:IPR012845
InterPro:IPR013324
InterPro:IPR013325
InterPro:IPR014284
InterPro:IPR028617

P

Seeded From UniProt

complete

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000943
InterPro:IPR007624
InterPro:IPR007627
InterPro:IPR007630
InterPro:IPR012845
InterPro:IPR013324
InterPro:IPR013325
InterPro:IPR014284
InterPro:IPR028617

P

Seeded From UniProt

complete

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000038

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0731

P

Seeded From UniProt

complete

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000038

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0805

P

Seeded From UniProt

complete

GO:0010468

regulation of gene expression

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00962

P

Seeded From UniProt

complete

GO:0016987

sigma factor activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000943
InterPro:IPR007624
InterPro:IPR007627
InterPro:IPR007630
InterPro:IPR012845
InterPro:IPR013324
InterPro:IPR013325
InterPro:IPR014284
InterPro:IPR016263
InterPro:IPR028617

F

Seeded From UniProt

complete

GO:0016987

sigma factor activity

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00962

F

Seeded From UniProt

complete

GO:0016987

sigma factor activity

GO_REF:0000038

IEA: Inferred from Electronic Annotation

UniProtKB-KW:KW-0731

F

Seeded From UniProt

complete

GO:0030435

sporulation resulting in formation of a cellular spore

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016263

P

Seeded From UniProt

complete

Notes

References

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