GONUTS is under stress! The website is currently experiencing long-wait times and frequent time-outs due to the record number of students, groups, and annotations related to CACAO this semester. We are currently working on increasing performance -- please accept our apologies for the technical difficulties.
You can help reduce stress on the server by:
- not reloading pages frequently - this just adds
- opening links in new windows (so you can read the old page)
TAIR:HDS
Contents |
| Species (Taxon ID) | Arabidopsis thaliana (thale cress) (taxon:3702) | |
| Gene Name(s) | HDS ( synonyms: AT5G60600, GCPE, ISPG, CSB3, CLB4, CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, AT5G60600.1, MUP24.15, MUP24_15, AT5G60600.2, AT5G60600.3, HDS, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase ) | |
| Protein Name(s) | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase, AT5G60600, | |
| External Links | ||
| TAIR | locus:2175851 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005506 |
iron ion binding |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR017178 |
F |
From TAIR |
||
| GO:0005506 |
iron ion binding |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR017178 |
F |
From TAIR |
||
| GO:0005506 |
iron ion binding |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR017178 |
F |
From TAIR |
||
| GO:0008299 |
isoprenoid biosynthetic process |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR017178 |
P |
From TAIR |
||
| GO:0008299 |
isoprenoid biosynthetic process |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR017178 |
P |
From TAIR |
||
| GO:0008299 |
isoprenoid biosynthetic process |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR017178 |
P |
From TAIR |
||
| GO:0008299 |
isoprenoid biosynthetic process |
TAIR:Communication:501714663 |
ISS: Inferred from Sequence or Structural Similarity |
NCBI_gi:13094969 |
P |
From TAIR |
||
| GO:0009507 |
chloroplast |
TAIR:Publication:501681896 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0009507 |
chloroplast |
TAIR:Publication:501712079 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0009507 |
chloroplast |
TAIR:Publication:501712079 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0009507 |
chloroplast |
TAIR:Publication:501724486 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0009507 |
chloroplast |
TAIR:Publication:501724486 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0009507 |
chloroplast |
TAIR:Publication:501724486 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0009570 |
chloroplast stroma |
TAIR:Publication:501727324 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0009570 |
chloroplast stroma |
TAIR:Publication:501728638 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0009570 |
chloroplast stroma |
TAIR:Publication:501735990 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0009617 |
response to bacterium |
TAIR:Publication:501717706 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:0009862 |
systemic acquired resistance, salicylic acid mediated signaling pathway |
TAIR:Publication:501717706 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:0009941 |
chloroplast envelope |
TAIR:Publication:501710686 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0009941 |
chloroplast envelope |
TAIR:Publication:501710686 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0016114 |
terpenoid biosynthetic process |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR004588 |
P |
From TAIR |
||
| GO:0016114 |
terpenoid biosynthetic process |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR004588 |
P |
From TAIR |
||
| GO:0016114 |
terpenoid biosynthetic process |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR004588 |
P |
From TAIR |
||
| GO:0019288 |
isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway |
TAIR:Publication:501714421 |
TAS: Traceable Author Statement |
P |
From TAIR |
|||
| GO:0044237 |
cellular metabolic process |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR011005 |
P |
From TAIR |
||
| GO:0044237 |
cellular metabolic process |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR011005 |
P |
From TAIR |
||
| GO:0044237 |
cellular metabolic process |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR011005 |
P |
From TAIR |
||
| GO:0046429 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR004588 |
F |
From TAIR |
||
| GO:0046429 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR004588 |
F |
From TAIR |
||
| GO:0046429 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR004588 |
F |
From TAIR |
||
| GO:0046429 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity |
TAIR:Communication:501714663 |
ISS: Inferred from Sequence or Structural Similarity |
NCBI_gi:13094969 |
F |
From TAIR |
||
| GO:0046429 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity |
TAIR:Publication:501681896 |
IGI: Inferred from Genetic Interaction |
F |
From TAIR |
|||
| GO:0046429 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity |
TAIR:Publication:501714421 |
IDA: Inferred from Direct Assay |
F |
From TAIR |
|||
| GO:0051539 |
4 iron, 4 sulfur cluster binding |
TAIR:Publication:501714421 |
IDA: Inferred from Direct Assay |
F |
From TAIR |
|||
| GO:0055114 |
oxidation-reduction process |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR004588 |
P |
From TAIR |
||
| GO:0055114 |
oxidation-reduction process |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR004588 |
P |
From TAIR |
||
| GO:0055114 |
oxidation-reduction process |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR004588 |
P |
From TAIR |
| |
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Querol J et al. (2002) Functional analysis of the Arabidopsis thaliana GCPE protein involved in plastid isoprenoid biosynthesis. FEBS Lett 514: 343-6 PubMed GONUTS page
- ↑ 2.0 2.1 Kleffmann T et al. (2004) The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. Curr Biol 14: 354-62 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 Zybailov B et al. (2008) Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. PLoS One 3: e1994 PubMed GONUTS page
- ↑ Rutschow H et al. (2008) Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Plant Physiol 148: 156-75 PubMed GONUTS page
- ↑ Peltier JB et al. (2006) The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Mol Cell Proteomics 5: 114-33 PubMed GONUTS page
- ↑ Ferro M et al. (2010) AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Mol Cell Proteomics 9: 1063-84 PubMed GONUTS page
- ↑ 7.0 7.1 Gil MJ et al. (2005) The Arabidopsis csb3 mutant reveals a regulatory link between salicylic acid-mediated disease resistance and the methyl-erythritol 4-phosphate pathway. Plant J 44: 155-66 PubMed GONUTS page
- ↑ 8.0 8.1 Froehlich JE et al. (2003) Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. J Proteome Res 2: 413-25 PubMed GONUTS page
- ↑ 9.0 9.1 9.2 Seemann M et al. (2005) Isoprenoid biosynthesis in chloroplasts via the methylerythritol phosphate pathway: the (E)-4-hydroxy-3-methylbut-2-enyl diphosphate synthase (GcpE) from Arabidopsis thaliana is a [4Fe-4S] protein. J Biol Inorg Chem 10: 131-7 PubMed GONUTS page
