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TAIR:HDA19
Contents |
| Species (Taxon ID) | Arabidopsis thaliana (thale cress) (taxon:3702) | |
| Gene Name(s) | HD1 ( synonyms: AT4G38130, ATHD1, HDA1, RPD3A, HDA19, ARABIDOPSIS HISTONE DEACETYLASE 1, HISTONE DEACETYLASE 19, AT4G38130.2, HISTONE DEACETYLASE, ATRPD3A, ATHDA19, ARABIDOPSIS HISTONE DEACETYLASE 19, AT4G38130.1, F20D10.250, F20D10_250, HD1, histone deacetylase 1 ) | |
| Protein Name(s) | histone deacetylase 1, AT4G38130, | |
| External Links | ||
| TAIR | locus:2120948 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0004407 |
histone deacetylase activity |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR003084 |
F |
From TAIR |
||
| GO:0004407 |
histone deacetylase activity |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR003084 |
F |
From TAIR |
||
| GO:0004407 |
histone deacetylase activity |
TAIR:Communication:501714663 |
ISS: Inferred from Sequence or Structural Similarity |
INTERPRO:IPR003084 |
F |
From TAIR |
||
| GO:0004407 |
histone deacetylase activity |
TAIR:Publication:501682935 |
ISS: Inferred from Sequence or Structural Similarity |
F |
From TAIR |
|||
| GO:0004407 |
histone deacetylase activity |
TAIR:Publication:501719087 |
IDA: Inferred from Direct Assay |
F |
From TAIR |
|||
| GO:0004407 |
histone deacetylase activity |
TAIR:Publication:501748155 |
IDA: Inferred from Direct Assay |
F |
From TAIR |
|||
| GO:0004407 |
histone deacetylase activity |
TAIR:Publication:5946 |
IMP: Inferred from Mutant Phenotype |
F |
From TAIR |
|||
| GO:0004407 |
histone deacetylase activity |
TAIR:Publication:5946 |
ISS: Inferred from Sequence or Structural Similarity |
F |
From TAIR |
|||
| GO:0005515 |
protein binding |
TAIR:Publication:501718349 |
IPI: Inferred from Physical Interaction |
TAIR:gene:2043703 |
F |
From TAIR |
||
| GO:0005515 |
protein binding |
TAIR:Publication:501718349 |
IPI: Inferred from Physical Interaction |
F |
From TAIR |
|||
| GO:0005515 |
protein binding |
TAIR:Publication:501724655 |
IPI: Inferred from Physical Interaction |
F |
From TAIR |
|||
| GO:0005515 |
protein binding |
TAIR:Publication:501728797 |
IPI: Inferred from Physical Interaction |
F |
From TAIR |
|||
| GO:0005515 |
protein binding |
TAIR:Publication:501728797 |
IPI: Inferred from Physical Interaction |
F |
From TAIR |
|||
| GO:0005634 |
nucleus |
TAIR:Communication:501714663 |
ISS: Inferred from Sequence or Structural Similarity |
INTERPRO:IPR003084 |
C |
From TAIR |
||
| GO:0005634 |
nucleus |
TAIR:Publication:501715093 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0005634 |
nucleus |
TAIR:Publication:501719447 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0005634 |
nucleus |
TAIR:Publication:501748155 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0009294 |
DNA mediated transformation |
TAIR:Publication:501723200 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:0009405 |
pathogenesis |
TAIR:Publication:501748155 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:0009861 |
jasmonic acid and ethylene-dependent systemic resistance |
TAIR:Publication:501715093 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:0016573 |
histone acetylation |
TAIR:Publication:501720435 |
IDA: Inferred from Direct Assay |
P |
From TAIR |
|||
| GO:0016575 |
histone deacetylation |
TAIR:Communication:501714663 |
ISS: Inferred from Sequence or Structural Similarity |
INTERPRO:IPR003084 |
P |
From TAIR |
||
| GO:0016575 |
histone deacetylation |
TAIR:Publication:501748155 |
IDA: Inferred from Direct Assay |
P |
From TAIR |
|||
| GO:0045892 |
negative regulation of transcription, DNA-dependent |
TAIR:Publication:501716398 |
IDA: Inferred from Direct Assay |
P |
From TAIR |
|||
| GO:0045892 |
negative regulation of transcription, DNA-dependent |
TAIR:Publication:501718349 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:2000026 |
regulation of multicellular organismal development |
TAIR:Publication:5946 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
| ||
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Pandey R et al. (2002) Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes. Nucleic Acids Res 30: 5036-55 PubMed GONUTS page
- ↑ Fong PM et al. (2006) Arabidopsis thaliana histone deacetylase 1 (AtHD1) is localized in euchromatic regions and demonstrates histone deacetylase activity in vitro. Cell Res 16: 479-88 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 Choi SM et al. (2012) HDA19 is required for the repression of salicylic acid biosynthesis and salicylic acid-mediated defense responses in Arabidopsis. Plant J PubMed GONUTS page
- ↑ 4.0 4.1 4.2 Tian L & Chen ZJ (2001) Blocking histone deacetylation in Arabidopsis induces pleiotropic effects on plant gene regulation and development. Proc Natl Acad Sci U S A 98: 200-5 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 Song CP & Galbraith DW (2006) AtSAP18, an orthologue of human SAP18, is involved in the regulation of salt stress and mediates transcriptional repression in Arabidopsis. Plant Mol Biol 60: 241-57 PubMed GONUTS page
- ↑ Gao MJ et al. (2004) An auxin-responsive SCARECROW-like transcriptional activator interacts with histone deacetylase. Plant Mol Biol 55: 417-31 PubMed GONUTS page
- ↑ 7.0 7.1 Kim KC et al. (2008) Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Plant Cell 20: 2357-71 PubMed GONUTS page
- ↑ 8.0 8.1 Zhou C et al. (2005) HISTONE DEACETYLASE19 is involved in jasmonic acid and ethylene signaling of pathogen response in Arabidopsis. Plant Cell 17: 1196-204 PubMed GONUTS page
- ↑ Long JA et al. (2006) TOPLESS regulates apical embryonic fate in Arabidopsis. Science 312: 1520-3 PubMed GONUTS page
- ↑ Crane YM & Gelvin SB (2007) RNAi-mediated gene silencing reveals involvement of Arabidopsis chromatin-related genes in Agrobacterium-mediated root transformation. Proc Natl Acad Sci U S A 104: 15156-61 PubMed GONUTS page
- ↑ Benhamed M et al. (2006) Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression. Plant Cell 18: 2893-903 PubMed GONUTS page
- ↑ Song CP et al. (2005) Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses. Plant Cell 17: 2384-96 PubMed GONUTS page
dh |
jnp |
p cont.r |
