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TAIR:CHR1
Contents |
| Species (Taxon ID) | Arabidopsis thaliana (thale cress) (taxon:3702) | |
| Gene Name(s) | CHR1 ( synonyms: AT5G66750, DDM1, CHR01, CHA1, SOM4, SOM1, ATDDM1, DECREASED DNA METHYLATION 1, CHROMATIN REMODELING 1, SOMNIFEROUS 1, AT5G66750.1, MSN2.14, MSN2_14, CHR1 ) | |
| Protein Name(s) | chromatin remodeling 1, AT5G66750, | |
| External Links | ||
| TAIR | locus:2173644 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0000786 |
nucleosome |
TAIR:Publication:501682585 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0003676 |
nucleic acid binding |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR001650 |
F |
From TAIR |
||
| GO:0003677 |
DNA binding |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR000330 |
F |
From TAIR |
||
| GO:0004003 |
ATP-dependent DNA helicase activity |
TAIR:Publication:501682585 |
IMP: Inferred from Mutant Phenotype |
F |
From TAIR |
|||
| GO:0004386 |
helicase activity |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR001650 |
F |
From TAIR |
||
| GO:0004386 |
helicase activity |
TAIR:Communication:501714663 |
ISS: Inferred from Sequence or Structural Similarity |
INTERPRO:IPR001650 |
F |
From TAIR |
||
| GO:0005515 |
protein binding |
TAIR:Publication:501715070 |
IPI: Inferred from Physical Interaction |
F |
From TAIR |
|||
| GO:0005515 |
protein binding |
TAIR:Publication:501715070 |
IPI: Inferred from Physical Interaction |
F |
From TAIR |
|||
| GO:0005515 |
protein binding |
TAIR:Publication:501715070 |
IPI: Inferred from Physical Interaction |
F |
From TAIR |
|||
| GO:0005524 |
ATP binding |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR000330 |
F |
From TAIR |
||
| GO:0006344 |
maintenance of chromatin silencing |
TAIR:Publication:501720451 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:0006346 |
methylation-dependent chromatin silencing |
TAIR:Publication:2510 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:0006349 |
regulation of gene expression by genetic imprinting |
TAIR:Publication:953 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:0008152 |
metabolic process |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR001650 |
P |
From TAIR |
||
| GO:0009294 |
DNA mediated transformation |
TAIR:Publication:501723200 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:0016887 |
ATPase activity |
TAIR:Publication:501682585 |
IDA: Inferred from Direct Assay |
F |
From TAIR |
|||
| GO:0032197 |
transposition, RNA-mediated |
TAIR:Publication:501734867 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:0044030 |
regulation of DNA methylation |
TAIR:Publication:501681758 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:0051574 |
positive regulation of histone H3-K9 methylation |
TAIR:Publication:501681758 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:0051574 |
positive regulation of histone H3-K9 methylation |
TAIR:Publication:501682955 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:0090241 |
negative regulation of histone H4 acetylation |
TAIR:Publication:501682955 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
| ||
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Brzeski J & Jerzmanowski A (2003) Deficient in DNA methylation 1 (DDM1) defines a novel family of chromatin-remodeling factors. J Biol Chem 278: 823-8 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Zemach A et al. (2005) DDM1 binds Arabidopsis methyl-CpG binding domain proteins and affects their subnuclear localization. Plant Cell 17: 1549-58 PubMed GONUTS page
- ↑ Habu Y et al. (2006) Epigenetic regulation of transcription in intermediate heterochromatin. EMBO Rep 7: 1279-84 PubMed GONUTS page
- ↑ Jeddeloh JA et al. (1998) The DNA methylation locus DDM1 is required for maintenance of gene silencing in Arabidopsis. Genes Dev 12: 1714-25 PubMed GONUTS page
- ↑ Vielle-Calzada JP et al. (1999) Maintenance of genomic imprinting at the Arabidopsis medea locus requires zygotic DDM1 activity. Genes Dev 13: 2971-82 PubMed GONUTS page
- ↑ Crane YM & Gelvin SB (2007) RNAi-mediated gene silencing reveals involvement of Arabidopsis chromatin-related genes in Agrobacterium-mediated root transformation. Proc Natl Acad Sci U S A 104: 15156-61 PubMed GONUTS page
- ↑ Tsukahara S et al. (2009) Bursts of retrotransposition reproduced in Arabidopsis. Nature 461: 423-6 PubMed GONUTS page
- ↑ 8.0 8.1 Johnson L et al. (2002) Interplay between two epigenetic marks. DNA methylation and histone H3 lysine 9 methylation. Curr Biol 12: 1360-7 PubMed GONUTS page
- ↑ 9.0 9.1 Soppe WJ et al. (2002) DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis. EMBO J 21: 6549-59 PubMed GONUTS page
