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TAIR:AT2G40030
Contents |
| Species (Taxon ID) | Arabidopsis thaliana (thale cress) (taxon:3702) | |
| Gene Name(s) | NRPD1B ( synonyms: AT2G40030, NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1, nuclear RNA polymerase D1B, DEFECTIVE IN MERISTEM SILENCING 5, T28M21.19, T28M21_19, AT2G40030.1 ) | |
| Protein Name(s) | AT2G40030, nuclear RNA polymerase D1B, | |
| External Links | ||
| TAIR | locus:2061151 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0000418 |
DNA-directed RNA polymerase IV complex |
TAIR:Publication:501715308 |
IPI: Inferred from Physical Interaction |
C |
From TAIR |
|||
| GO:0000419 |
DNA-directed RNA polymerase V complex |
TAIR:Publication:501717533 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0000419 |
DNA-directed RNA polymerase V complex |
TAIR:Publication:501729760 |
IPI: Inferred from Physical Interaction |
C |
From TAIR |
|||
| GO:0003677 |
DNA binding |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR000722 |
F |
From TAIR |
||
| GO:0003677 |
DNA binding |
TAIR:Communication:501714663 |
ISS: Inferred from Sequence or Structural Similarity |
INTERPRO:IPR000722 |
F |
From TAIR |
||
| GO:0003899 |
DNA-directed RNA polymerase activity |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR000722 |
F |
From TAIR |
||
| GO:0003899 |
DNA-directed RNA polymerase activity |
TAIR:Communication:501714663 |
ISS: Inferred from Sequence or Structural Similarity |
INTERPRO:IPR000722 |
F |
From TAIR |
||
| GO:0003899 |
DNA-directed RNA polymerase activity |
TAIR:Publication:501716313 |
ISS: Inferred from Sequence or Structural Similarity |
F |
From TAIR |
|||
| GO:0005515 |
protein binding |
TAIR:Publication:501719216 |
IPI: Inferred from Physical Interaction |
F |
From TAIR |
|||
| GO:0005515 |
protein binding |
TAIR:Publication:501719217 |
IPI: Inferred from Physical Interaction |
F |
From TAIR |
|||
| GO:0005515 |
protein binding |
TAIR:Publication:501733257 |
IPI: Inferred from Physical Interaction |
F |
From TAIR |
|||
| GO:0005634 |
nucleus |
TAIR:Communication:501714663 |
ISS: Inferred from Sequence or Structural Similarity |
INTERPRO:IPR000722 |
C |
From TAIR |
||
| GO:0005634 |
nucleus |
TAIR:Publication:501717533 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0005634 |
nucleus |
TAIR:Publication:501717533 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0005730 |
nucleolus |
TAIR:Publication:501719217 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0006306 |
DNA methylation |
TAIR:Publication:501716313 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:0006351 |
transcription, DNA-dependent |
TAIR:AnalysisReference:501748310 |
IEA: Inferred from Electronic Annotation |
INTERPRO:IPR000722 |
P |
From TAIR |
||
| GO:0006351 |
transcription, DNA-dependent |
TAIR:Communication:501714663 |
ISS: Inferred from Sequence or Structural Similarity |
INTERPRO:IPR000722 |
P |
From TAIR |
||
| GO:0016604 |
nuclear body |
TAIR:Publication:501719216 |
IDA: Inferred from Direct Assay |
C |
From TAIR |
|||
| GO:0030422 |
production of siRNA involved in RNA interference |
TAIR:Publication:501724104 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
|||
| GO:0030422 |
production of siRNA involved in RNA interference |
TAIR:Publication:501730607 |
IGI: Inferred from Genetic Interaction |
P |
From TAIR |
|||
| GO:0030880 |
RNA polymerase complex |
TAIR:Publication:501717533 |
IPI: Inferred from Physical Interaction |
C |
From TAIR |
|||
| GO:0035194 |
posttranscriptional gene silencing by RNA |
TAIR:Publication:501717533 |
IMP: Inferred from Mutant Phenotype |
P |
From TAIR |
| ||
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Onodera Y et al. (2005) Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 120: 613-22 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 Pontier D et al. (2005) Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes Dev 19: 2030-40 PubMed GONUTS page
- ↑ Ream TS et al. (2009) Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. Mol Cell 33: 192-203 PubMed GONUTS page
- ↑ 4.0 4.1 Kanno T et al. (2005) Atypical RNA polymerase subunits required for RNA-directed DNA methylation. Nat Genet 37: 761-5 PubMed GONUTS page
- ↑ 5.0 5.1 Li CF et al. (2006) An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell 126: 93-106 PubMed GONUTS page
- ↑ 6.0 6.1 Pontes O et al. (2006) The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell 126: 79-92 PubMed GONUTS page
- ↑ He XJ et al. (2009) An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein. Cell 137: 498-508 PubMed GONUTS page
- ↑ Mosher RA et al. (2008) PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis. Proc Natl Acad Sci U S A 105: 3145-50 PubMed GONUTS page
- ↑ He XJ et al. (2009) NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation. Genes Dev 23: 318-30 PubMed GONUTS page
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