The Spring 2012 season of CACAO has started!
Version
From GONUTS
License
This wiki is powered by MediaWiki, copyright © 2001-2012 Magnus Manske, Brion Vibber, Lee Daniel Crocker, Tim Starling, Erik Möller, Gabriel Wicke, Ævar Arnfjörð Bjarmason, Niklas Laxström, Domas Mituzas, Rob Church, Yuri Astrakhan, Aryeh Gregor, Aaron Schulz, Andrew Garrett, Raimond Spekking, Alexandre Emsenhuber, Siebrand Mazeland, Chad Horohoe, Roan Kattouw, Trevor Parscal, Bryan Tong Minh, Sam Reed, Victor Vasiliev, Rotem Liss, Platonides, Ashar Voultoiz and others.
MediaWiki is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
MediaWiki is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA or read it online.Installed software
| Product | Version |
|---|---|
| MediaWiki | 1.17.0 |
| PHP | 5.2.9 (apache2handler) |
| MySQL | 5.5.19-log |
Installed extensions
| Special pages | |||
|---|---|---|---|
| CACAO II (Version 1.3.4) | Show statistics about cacao instructors | Daniel Renfro and Jim Hu | |
| GoPageMaker (Version 1.3) | Specialized Inputbox for GO page creation | Daniel Renfro | |
| Main cacao page. (Version 1.3.4) | Handles the CACAO scoring and annotations. | Daniel Renfro and Jim Hu | |
| [coming soon RestrictiveRights] (Version 0.11) | change rights so explicit false is dominant | Jim Hu | |
| SpecialInterwiki | (r1929) | Adds a special page to view and edit the interwiki table | Stephanie Amanda Stevens, SPQRobin and others |
| TableEdit (Version 1.0.5) | adds a forms-based table editor as a special page | Jim Hu and Daniel Renfro | |
| UserRightsList (Version 0.53) | list-based user rights management | Jim Hu | |
| WikiArticleFeeds (Version 0.6.7) | (r109847) | Produces feeds generated from MediaWiki pages | Jim Wilson (wilson.jim.r<at>gmail.com) |
| Parser hooks | |||
| cacao (Version 1.3.4) | Handles cacao variables for users (usually found on user and group pages.) | Daniel Renfro and Jim Hu | |
| cacaoScoreboard (Version 1.3.4) | Shows the current standing of all teams in a CACAO session as well as the status of challenges. | Daniel Renfro and Jim Hu | |
| CharInsert | (r1929) | Allows creation of JavaScript box for inserting non-standard characters | Brion Vibber |
| Cite | Adds <ref[ name=id]> and <references/> tags, for citations | Ævar Arnfjörð Bjarmason | |
| CSS (Version 1.0.0, 2007-06-15) | A parser-function for adding CSS's to articles | User:Nad | |
| gbrowseImage (Version 0.2) | gbrowse images | Daniel Renfro, Jim Hu and Dan Bolser | |
| InputBox (Version 0.1.4) | (r1929) | Allow inclusion of predefined HTML forms | Erik Moeller, Leonardo Pimenta, Rob Church, Trevor Parscal and DaSch |
| myAnnotations (Version 1.3.4) | (Deprecated as of v1.0). Shows a user or group's annotations in a formatted table. | Daniel Renfro and Jim Hu | |
| Page CSS | A parser hook to add per-page css to pages with the <css> tag | Ævar Arnfjörð Bjarmason | |
| ParserFunctions (Version 1.3.0) | (r1929) | Enhance parser with logical functions | Tim Starling, Robert Rohde, Ross McClure and Juraj Simlovic |
| RSS feed (Version 1.5) | Displays an RSS feed on a wiki page | mutante, Duesentrieb, Rdb, Mafs, Alxndr, Wikinaut and Cmreigrut | |
| TableMarkerUpper (Version 0.01) | Inserts a 'thead' and 'tfoot' tag into tables. | Daniel Renfro | |
| Other | |||
| AccessionsOnDemand (Version 0.1) | Not really a pages on demand - redirects to accessions | Jim Hu <jimhu@tamu.edu> | |
| BetterOutline (Version 0.1) | Adds a tag for outlines. | Daniel Renfro | |
| Cacao (Version 1.3.4) | Provides an mechanism by which to run the CACAO class. Adds a number of parser-tags and special variables. | Daniel Renfro and Jim Hu | |
| Category:GO_OnDemand (Version 0.1) | Create Category pages with PagesOnDemand mechanism | Jim Hu <jimhu@tamu.edu> | |
| Contribution Credits (Sidebar hack) (Version 1.06, 2008-05-19) | adds Contribution Credits to the Sidebar | Jaime Prilusky, Daniel Renfro | |
| DataTables (Version 0.1.0) | Datatables jQuery library for MediaWiki | Daniel Renfro (Mediawiki Extension) and Allan Jardine (Javascript library) | |
| ExtendedCategoryPage (Version 0.2.5) | Adds some fancy customizations to the Catgory: page. | Daniel Renfro | |
| Google Analytics Integration (Version 1.2) | Inserts Google Analytics script (urchin.js) in to MediaWiki pages for tracking. | Tim Laqua | |
| Google Site Search 1.2 | Uses Google to search the wiki, instead of MediaWiki's own search function (not affiliated in any way with Google, Inc.) | Ryan Finnie | |
| Hu Laboratory Code (Version 0.5) | Many classes for making things easier. | Daniel Renfro and Jim Hu | |
| PagesOnDemand (Version 0.1) | Provides mechanism for generating wiki articles on demand. | Jim Hu <jimhu@tamu.edu> and Jim Wilson <wilson.jim.r@gmail.com> | |
| PMID_OnDemand (Version 0.1) | Uses PagesOnDemand to generate wiki articles about papers indexed in the National Library of Medicine PubMed database on demand. | Jim Hu <jimhu@tamu.edu> and Jim Wilson <wilson.jim.r@gmail.com> | |
| PreloadOnDemand (Version 0.1) | Apply pages on demand to inputbox pages. | Jim Hu <jimhu@tamu.edu> | |
| ProcessCite (Version 0.11) | Generates reference text for papers in National Library of Medicine PubMed database. | Jim Hu <jimhu@tamu.edu> | |
| TableEdit:AspectLookup (Version 0.1) | Complete's the Aspect given a GO id. | Daniel Renfro | |
| TableEdit:dbxref (Version 0.1) | Special column type for dbxrefs, including publications | Jim Hu <jimhu@tamu.edu> | |
| TableEdit:go_annotation (Version 0.1) | Special column type for go annotation completeness | Jim Hu <jimhu@tamu.edu> | |
| TableEdit:go_nr (Version 0.1) | Special column type for go annotation completeness | Jim Hu <jimhu@tamu.edu> | |
| TableEdit:GoTermLookup (Version 0.1) | Complete's the GO term given a GO id. | Daniel Renfro | |
| TableEdit:protein_properties (Version 0.1) | Special column type for genome coordinates | Jim Hu <jimhu@tamu.edu> | |
| TableEdit:quicklinks (Version 0.1) | Special column type for genome quicklinks | Jim Hu <jimhu@tamu.edu> | |
| TableEdit:strains (Version 0.1) | Special column type for creating a dropdown list of strains. | Daniel Renfro | |
| TableEditLinks (Version 0.1) | Add links to table entries for TableEdit. | Jim Hu <jimhu@tamu.edu> and Daniel Renfro | |
| Vector (Version 0.3.0) | (r1929) | Improves on the user interface elements of the Vector skin. | Trevor Parscal, Roan Kattouw, Nimish Gautam and Adam Miller |
| Extension functions | |||
| efDBsummaryExtension, efEssentialGenes, efGOsummaryExtension, efPMIDsummaryExtension, efUserRecent, wfCssHook, wfEjExtension, wfGOfigExtension, wfGOtermExtension, wfIframe, wfProtectSectionSetup, wfSetupCSS and wfSetupParserFunctions | |||
| Parser extension tags | |||
| <cacao>, <cacaoscoreboard>, <charinsert>, <css>, <dbsummary>, <ejamb>, <endfeed>, <essentialgenes>, <feedburner>, <gallery>, <gbrowseimage>, <gofig>, <gosummary>, <goterm>, <iframe_embed>, <inputbox>, <itemtags>, <myannotations>, <nowiki>, <outline>, <pmidsummary>, <pre>, <ref>, <references>, <rss>, <scoreboard>, <startfeed> and <userrecent> | |||
| Parser function hooks | |||
| anchorencode, basepagename, basepagenamee, css, defaultsort, displaytitle, expr, filepath, formatdate, formatnum, fullpagename, fullpagenamee, fullurl, fullurle, gender, grammar, if, ifeq, iferror, ifexist, ifexpr, int, itemtags, language, lc, lcfirst, localurl, localurle, namespace, namespacee, ns, nse, numberingroup, numberofactiveusers, numberofadmins, numberofarticles, numberofedits, numberoffiles, numberofpages, numberofusers, numberofviews, padleft, padright, pagename, pagenamee, pagesincategory, pagesize, plural, protectionlevel, rel2abs, special, subjectpagename, subjectpagenamee, subjectspace, subjectspacee, subpagename, subpagenamee, switch, tag, talkpagename, talkpagenamee, talkspace, talkspacee, time, timel, titleparts, uc, ucfirst and urlencode | |||
