Version
From GONUTS
License
This wiki is powered by MediaWiki, copyright (C) 2001-2008 Magnus Manske, Brion Vibber, Lee Daniel Crocker, Tim Starling, Erik Möller, Gabriel Wicke, Ævar Arnfjörð Bjarmason, Niklas Laxström, Domas Mituzas, Rob Church, Yuri Astrakhan, Aryeh Gregor, Aaron Schulz and others.
MediaWiki is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
MediaWiki is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA or read it online.
Installed software
| Product | Version |
|---|---|
| MediaWiki | 1.14.1 |
| PHP | 5.2.9 (apache2handler) |
| MySQL | 5.0.41 |
Installed extensions
| Special pages | ||
|---|---|---|
| GoPageMaker (Version 0.3) | Specialized Inputbox for GO page creation | Daniel Renfro |
| [coming soon RestrictiveRights] (Version 0.11) | change rights so explicit false is dominant | Jim Hu |
| SpecialInterwiki | Adds a special page to view and edit the interwiki table | SPQRobin, Stephanie Amanda Stevens and others |
| TableEdit (Version 0.99) | adds a forms-based table editor as a special page | Jim Hu and Daniel Renfro |
| UserRightsList (Version 0.52) | list-based user rights management | Jim Hu |
| Parser hooks | ||
| CharInsert | Allows creation of JavaScript box for inserting non-standard characters | Brion Vibber |
| Cite (Version r44056) | Adds <ref[ name=id]> and <references/> tags, for citations | Ævar Arnfjörð Bjarmason |
| Inputbox | Erik Moeller | |
| RSS feed (Version 1.5) | Displays an RSS feed on a wiki page | Alxndr, Cmreigrut, Duesentrieb, Mafs, Rdb, Wikinaut and mutante |
| Other | ||
| BetterCategoryPage (Version 1.0) | Alternative Category page with separate sections for subcategories and categories. | Daniel Renfro |
| Category:GO_OnDemand (Version 0.1) | Create Category pages with PagesOnDemand mechanism | Jim Hu <jimhu@tamu.edu> |
| Contribution Credits (Sidebar hack) (Version 1.06, 2008-05-19) | adds Contribution Credits to the Sidebar | Jaime Prilusky, Daniel Renfro |
| GeSHiHighlight | Allows for the highlighting of various types of code including php, html, xml, sql, c, pascal, etc | |
| Google Analytics Integration (Version 1.2) | Inserts Google Analytics script (urchin.js) in to MediaWiki pages for tracking. | Tim Laqua |
| Google Site Search 1.2 | Uses Google to search the wiki, instead of MediaWiki's own search function (not affiliated in any way with Google, Inc.) | Ryan Finnie |
| GoTree (Version 1.0) | Ajax-based dropdown tree to traverse the Gene Ontology. | Daniel Renfro <bluecurio@gmail.com> |
| Newuserlog | adds a log of account creations to Special:Log | Ævar Arnfjörð Bjarmason |
| PagesOnDemand (Version 0.1) | Provides mechanism for generating wiki articles on demand. | Jim Hu <jimhu@tamu.edu> and Jim Wilson <wilson.jim.r@gmail.com> |
| PMID_OnDemand (Version 0.1) | Uses PagesOnDemand to generate wiki articles about papers indexed in the National Library of Medicine PubMed database on demand. | Jim Hu <jimhu@tamu.edu> and Jim Wilson <wilson.jim.r@gmail.com> |
| PreloadOnDemand (Version 0.1) | Apply pages on demand to inputbox pages. | Jim Hu <jimhu@tamu.edu> |
| ProcessCite (Version 0.11) | Generates reference text for papers in National Library of Medicine PubMed database. | Jim Hu <jimhu@tamu.edu> |
| TableEdit:go_annotation (Version 0.1) | Special column type for go annotation completeness | Jim Hu <jimhu@tamu.edu> |
| TableEditLinks (Version 0.1) | Add links to table entries for TableEdit. | Jim Hu <jimhu@tamu.edu> and Daniel Renfro |
| Extension functions | ||
| efGOsummaryExtension, efGoTree, efUserRecent, registerInputboxExtension, setupSpecialChars, wfEjExtension, wfGOfigExtension, wfGOtermExtension, wfGoPageMaker, wfIframe, wfNewuserlog, wfProtectSectionSetup and wfSyntaxExtension | ||
| Parser extension tags | ||
| <actionscript>, <actionscript-file>, <actionscript-french>, <actionscript-french-file>, <ada>, <ada-file>, <apache>, <apache-file>, <applescript>, <applescript-file>, <asm>, <asm-file>, <asp>, <asp-file>, <bash>, <bash-file>, <c>, <c-file>, <c_mac>, <c_mac-file>, <caddcl>, <caddcl-file>, <cadlisp>, <cadlisp-file>, <charinsert>, <cpp>, <cpp-file>, <csharp>, <csharp-file>, <css>, <css-file>, <d>, <d-file>, <delphi>, <delphi-file>, <diff>, <diff-file>, <dos>, <dos-file>, <eiffel>, <eiffel-file>, <ejamb>, <freebasic>, <freebasic-file>, <gml>, <gml-file>, <gofig>, <gosummary>, <goterm>, <html4strict>, <html4strict-file>, <iframe_embed>, <ini>, <ini-file>, <inno>, <inno-file>, <inputbox>, <java>, <java-file>, <javascript>, <javascript-file>, <lisp>, <lisp-file>, <lua>, <lua-file>, <matlab>, <matlab-file>, <mpasm>, <mpasm-file>, <nsis>, <nsis-file>, <objc>, <objc-file>, <ocaml>, <ocaml-brief>, <ocaml-brief-file>, <ocaml-file>, <oobas>, <oobas-file>, <oracle8>, <oracle8-file>, <pascal>, <pascal-file>, <perl>, <perl-file>, <php>, <php-brief>, <php-brief-file>, <php-file>, <pre>, <python>, <python-file>, <qbasic>, <qbasic-file>, <ref>, <references>, <rss>, <ruby>, <ruby-file>, <scheme>, <scheme-file>, <sdlbasic>, <sdlbasic-file>, <smarty>, <smarty-file>, <sql>, <sql-file>, <userrecent>, <vb>, <vb-file>, <vbnet>, <vbnet-file>, <vhdl>, <vhdl-file>, <visualfoxpro>, <visualfoxpro-file>, <xml> and <xml-file> | ||
| Parser function hooks | ||
| anchorencode, defaultsort, displaytitle, filepath, formatnum, fullurl, fullurle, grammar, int, language, lc, lcfirst, localurl, localurle, ns, numberingroup, numberofadmins, numberofarticles, numberofedits, numberoffiles, numberofpages, numberofusers, numberofviews, padleft, padright, pagesincategory, pagesize, plural, special, tag, uc, ucfirst and urlencode | ||
