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SGD:SNR7-S
Contents |
| Species (Taxon ID) | Saccharomyces cerevisiae (baker's yeast) (taxon:4932) | |
| Gene Name(s) | SNR7-S ( synonyms: snR7-S, SNR7 ) | |
| Protein Name(s) | U5 spliceosomal RNA (U5 snRNA), short form, | |
| External Links | ||
| SGD | S000006496 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0000350 |
generation of catalytic spliceosome for second transesterification step |
SGD_REF:S000116925 |
IMP: Inferred from Mutant Phenotype |
P |
From SGD |
|||
| GO:0000395 |
nuclear mRNA 5'-splice site recognition |
SGD_REF:S000125175 |
IDA: Inferred from Direct Assay |
P |
From SGD |
|||
| GO:0000398 |
nuclear mRNA splicing, via spliceosome |
SGD_REF:S000042788 |
IMP: Inferred from Mutant Phenotype |
P |
From SGD |
|||
| GO:0003723 |
RNA binding |
SGD_REF:S000050382 |
IDA: Inferred from Direct Assay |
F |
From SGD |
|||
| GO:0005682 |
U5 snRNP |
SGD_REF:S000066234 |
IDA: Inferred from Direct Assay |
C |
From SGD |
|||
| GO:0030627 |
pre-mRNA 5'-splice site binding |
SGD_REF:S000116925 |
IDA: Inferred from Direct Assay |
F |
From SGD |
|||
| GO:0030627 |
pre-mRNA 5'-splice site binding |
SGD_REF:S000125175 |
IDA: Inferred from Direct Assay |
F |
From SGD |
|||
| GO:0034403 |
alignment of 3' and 5' splice sites of nuclear mRNA |
SGD_REF:S000116925 |
IMP: Inferred from Mutant Phenotype |
P |
From SGD |
|||
| GO:0046540 |
U4/U6 x U5 tri-snRNP complex |
SGD_REF:S000039461 |
IDA: Inferred from Direct Assay |
C |
From SGD |
|||
| GO:0046540 |
U4/U6 x U5 tri-snRNP complex |
SGD_REF:S000056376 |
IDA: Inferred from Direct Assay |
C |
From SGD |
|||
|
contributes_to |
GO:0000386 |
second spliceosomal transesterification activity |
SGD_REF:S000116925 |
IMP: Inferred from Mutant Phenotype |
F |
From SGD |
| |
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 O'Keefe RT & Newman AJ (1998) Functional analysis of the U5 snRNA loop 1 in the second catalytic step of yeast pre-mRNA splicing. EMBO J 17: 565-74 PubMed GONUTS page
- ↑ 2.0 2.1 McGrail JC & O'Keefe RT (2008) The U1, U2 and U5 snRNAs crosslink to the 5' exon during yeast pre-mRNA splicing. Nucleic Acids Res 36: 814-25 PubMed GONUTS page
- ↑ Patterson B & Guthrie C (1987) An essential yeast snRNA with a U5-like domain is required for splicing in vivo. Cell 49: 613-24 PubMed GONUTS page
- ↑ Siliciano PG et al. (1987) An essential snRNA from S. cerevisiae has properties predicted for U4, including interaction with a U6-like snRNA. Cell 50: 585-92 PubMed GONUTS page
- ↑ Stevens SW et al. (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7: 1543-53 PubMed GONUTS page
- ↑ Gottschalk A et al. (1999) Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP. EMBO J 18: 4535-48 PubMed GONUTS page
- ↑ Stevens SW & Abelson J (1999) Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins. Proc Natl Acad Sci U S A 96: 7226-31 PubMed GONUTS page
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