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SGD:RRP46
Contents |
| Species (Taxon ID) | Saccharomyces cerevisiae (baker's yeast) (taxon:4932) | |
| Gene Name(s) | RRP46 ( synonyms: YGR095C ) | |
| Protein Name(s) | Exosome non-catalytic core component, | |
| External Links | ||
| SGD | S000003327 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0000176 |
nuclear exosome (RNase complex) |
SGD_REF:S000041327 |
IDA: Inferred from Direct Assay |
C |
From SGD |
|||
| GO:0000176 |
nuclear exosome (RNase complex) |
SGD_REF:S000128567 |
IDA: Inferred from Direct Assay |
C |
From SGD |
|||
| GO:0000177 |
cytoplasmic exosome (RNase complex) |
SGD_REF:S000041327 |
IDA: Inferred from Direct Assay |
C |
From SGD |
|||
| GO:0000177 |
cytoplasmic exosome (RNase complex) |
SGD_REF:S000128567 |
IDA: Inferred from Direct Assay |
C |
From SGD |
|||
| GO:0000178 |
exosome (RNase complex) |
SGD_REF:S000148669 |
IEA: Inferred from Electronic Annotation |
UniProtKB-KW:KW-0271 |
C |
From SGD |
||
| GO:0000467 |
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
SGD_REF:S000041327 |
IMP: Inferred from Mutant Phenotype |
P |
From SGD |
|||
| GO:0000467 |
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
SGD_REF:S000045654 |
IMP: Inferred from Mutant Phenotype |
P |
From SGD |
|||
| GO:0003674 |
molecular function |
SGD_REF:S000069584 |
ND: No biological Data available |
F |
From SGD |
|||
| GO:0003723 |
RNA binding |
SGD_REF:S000124036 |
IEA: Inferred from Electronic Annotation |
F |
From SGD |
|||
| GO:0003723 |
RNA binding |
SGD_REF:S000148669 |
IEA: Inferred from Electronic Annotation |
UniProtKB-KW:KW-0694 |
F |
From SGD |
||
| GO:0005634 |
nucleus |
SGD_REF:S000148669 |
IEA: Inferred from Electronic Annotation |
UniProtKB-KW:KW-0539 |
C |
From SGD |
||
| GO:0005730 |
nucleolus |
SGD_REF:S000148671 |
IEA: Inferred from Electronic Annotation |
UniProtKB-SubCell:SL-0188 |
C |
From SGD |
||
| GO:0005737 |
cytoplasm |
SGD_REF:S000148669 |
IEA: Inferred from Electronic Annotation |
UniProtKB-KW:KW-0963 |
C |
From SGD |
||
| GO:0005737 |
cytoplasm |
SGD_REF:S000148671 |
IEA: Inferred from Electronic Annotation |
UniProtKB-SubCell:SL-0086 |
C |
From SGD |
||
| GO:0006364 |
rRNA processing |
SGD_REF:S000148669 |
IEA: Inferred from Electronic Annotation |
UniProtKB-KW:KW-0698 |
P |
From SGD |
||
| GO:0006396 |
RNA processing |
SGD_REF:S000124036 |
IEA: Inferred from Electronic Annotation |
P |
From SGD |
|||
| GO:0034427 |
nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' |
SGD_REF:S000041327 |
IC: Inferred by Curator |
GO:0000177 |
P |
From SGD |
||
| GO:0043628 |
ncRNA 3'-end processing |
SGD_REF:S000041327 |
IC: Inferred by Curator |
GO:0000176 |
P |
From SGD |
||
| GO:0070478 |
nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay |
SGD_REF:S000041327 |
IC: Inferred by Curator |
GO:0000177 |
P |
From SGD |
||
| GO:0070481 |
nuclear-transcribed mRNA catabolic process, non-stop decay |
SGD_REF:S000041327 |
IC: Inferred by Curator |
GO:0000177 |
P |
From SGD |
||
| GO:0070651 |
nonfunctional rRNA decay |
SGD_REF:S000041327 |
IC: Inferred by Curator |
GO:0000177 |
P |
From SGD |
||
| GO:0071035 |
nuclear polyadenylation-dependent rRNA catabolic process |
SGD_REF:S000041327 |
IMP: Inferred from Mutant Phenotype |
P |
From SGD |
|||
| GO:0071038 |
nuclear polyadenylation-dependent tRNA catabolic process |
SGD_REF:S000081438 |
IDA: Inferred from Direct Assay |
P |
From SGD |
|||
| GO:0071038 |
nuclear polyadenylation-dependent tRNA catabolic process |
SGD_REF:S000123616 |
IDA: Inferred from Direct Assay |
P |
From SGD |
|||
| GO:0071042 |
nuclear polyadenylation-dependent mRNA catabolic process |
SGD_REF:S000131071 |
IMP: Inferred from Mutant Phenotype |
P |
From SGD |
|||
| GO:0071051 |
polyadenylation-dependent snoRNA 3'-end processing |
SGD_REF:S000041327 |
IC: Inferred by Curator |
GO:0000176 |
P |
From SGD |
| |
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Allmang C et al. (1999) The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases. Genes Dev 13: 2148-58 PubMed GONUTS page
- ↑ 2.0 2.1 Synowsky SA et al. (2009) Comparative multiplexed mass spectrometric analyses of endogenously expressed yeast nuclear and cytoplasmic exosomes. J Mol Biol 385: 1300-13 PubMed GONUTS page
- ↑ Allmang C et al. (1999) Functions of the exosome in rRNA, snoRNA and snRNA synthesis. EMBO J 18: 5399-410 PubMed GONUTS page
- ↑ Vanácová S et al. (2005) A new yeast poly(A) polymerase complex involved in RNA quality control. PLoS Biol 3: e189 PubMed GONUTS page
- ↑ Schneider C et al. (2007) The exosome subunit Rrp44 plays a direct role in RNA substrate recognition. Mol Cell 27: 324-31 PubMed GONUTS page
- ↑ Roth KM et al. (2009) Regulation of NAB2 mRNA 3'-end formation requires the core exosome and the Trf4p component of the TRAMP complex. RNA 15: 1045-58 PubMed GONUTS page
