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SGD:NHP6B
Contents |
| Species (Taxon ID) | Saccharomyces cerevisiae (baker's yeast) (taxon:4932) | |
| Gene Name(s) | NHP6B ( synonyms: YBR089C-A, YBR090C-A ) | |
| Protein Name(s) | High-mobility group protein that binds to and remodels nucleosomes, | |
| External Links | ||
| SGD | S000002157 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0003677 |
DNA binding |
SGD_REF:S000148669 |
IEA: Inferred from Electronic Annotation |
UniProtKB-KW:KW-0238 |
F |
From SGD |
||
| GO:0005634 |
nucleus |
SGD_REF:S000057037 |
IDA: Inferred from Direct Assay |
C |
From SGD |
|||
| GO:0005634 |
nucleus |
SGD_REF:S000148669 |
IEA: Inferred from Electronic Annotation |
UniProtKB-KW:KW-0539 |
C |
From SGD |
||
| GO:0005634 |
nucleus |
SGD_REF:S000148671 |
IEA: Inferred from Electronic Annotation |
UniProtKB-SubCell:SL-0191 |
C |
From SGD |
||
| GO:0005694 |
chromosome |
SGD_REF:S000148669 |
IEA: Inferred from Electronic Annotation |
UniProtKB-KW:KW-0158 |
C |
From SGD |
||
| GO:0005694 |
chromosome |
SGD_REF:S000148671 |
IEA: Inferred from Electronic Annotation |
UniProtKB-SubCell:SL-0468 |
C |
From SGD |
||
| GO:0006281 |
DNA repair |
SGD_REF:S000148669 |
IEA: Inferred from Electronic Annotation |
UniProtKB-KW:KW-0234 |
P |
From SGD |
||
| GO:0006338 |
chromatin remodeling |
SGD_REF:S000076895 |
IGI: Inferred from Genetic Interaction |
SGD:S000006256 |
P |
From SGD |
||
| GO:0006351 |
transcription, DNA-dependent |
SGD_REF:S000148669 |
IEA: Inferred from Electronic Annotation |
UniProtKB-KW:KW-0804 |
P |
From SGD |
||
| GO:0006355 |
regulation of transcription, DNA-dependent |
SGD_REF:S000148669 |
IEA: Inferred from Electronic Annotation |
UniProtKB-KW:KW-0805 |
P |
From SGD |
||
| GO:0006366 |
transcription from RNA polymerase II promoter |
SGD_REF:S000052961 |
IGI: Inferred from Genetic Interaction |
SGD:S000006256 |
P |
From SGD |
||
| GO:0006974 |
response to DNA damage stimulus |
SGD_REF:S000148669 |
IEA: Inferred from Electronic Annotation |
UniProtKB-KW:KW-0227 |
P |
From SGD |
||
| GO:0008301 |
DNA binding, bending |
SGD_REF:S000052281 |
IDA: Inferred from Direct Assay |
F |
From SGD |
|||
| GO:0031491 |
nucleosome binding |
SGD_REF:S000061420 |
ISS: Inferred from Sequence or Structural Similarity |
SGD:S000006256 |
F |
From SGD |
||
| GO:0043565 |
sequence-specific DNA binding |
SGD_REF:S000129025 |
IDA: Inferred from Direct Assay |
F |
From SGD |
|||
| GO:0070898 |
RNA polymerase III transcriptional preinitiation complex assembly |
SGD_REF:S000060366 |
IGI: Inferred from Genetic Interaction |
SGD:S000006256 |
P |
From SGD |
||
| GO:0070898 |
RNA polymerase III transcriptional preinitiation complex assembly |
SGD_REF:S000120089 |
IDA: Inferred from Direct Assay |
P |
From SGD |
| ||
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Kolodrubetz D et al. (1988) Amino-terminal sequence of a Saccharomyces cerevisiae nuclear protein, NHP6, shows significant identity to bovine HMG1. FEBS Lett 238: 175-9 PubMed GONUTS page
- ↑ Fragiadakis GS et al. (2004) Nhp6 facilitates Aft1 binding and Ssn6 recruitment, both essential for FRE2 transcriptional activation. EMBO J 23: 333-42 PubMed GONUTS page
- ↑ Paull TT et al. (1996) Yeast HMG proteins NHP6A/B potentiate promoter-specific transcriptional activation in vivo and assembly of preinitiation complexes in vitro. Genes Dev 10: 2769-81 PubMed GONUTS page
- ↑ Paull TT & Johnson RC (1995) DNA looping by Saccharomyces cerevisiae high mobility group proteins NHP6A/B. Consequences for nucleoprotein complex assembly and chromatin condensation. J Biol Chem 270: 8744-54 PubMed GONUTS page
- ↑ Formosa T et al. (2001) Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome-binding factor SPN. EMBO J 20: 3506-17 PubMed GONUTS page
- ↑ Zhu C et al. (2009) High-resolution DNA-binding specificity analysis of yeast transcription factors. Genome Res 19: 556-66 PubMed GONUTS page
- ↑ Lopez S et al. (2001) High-mobility-group proteins NHP6A and NHP6B participate in activation of the RNA polymerase III SNR6 gene. Mol Cell Biol 21: 3096-104 PubMed GONUTS page
- ↑ Braglia P et al. (2007) Requirement of Nhp6 proteins for transcription of a subset of tRNA genes and heterochromatin barrier function in Saccharomyces cerevisiae. Mol Cell Biol 27: 1545-57 PubMed GONUTS page
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