SGD:AIR1
From GONUTS
Contents |
| Species (Taxon ID) | Saccharomyces cerevisiae (baker's yeast) (taxon:4932) | |
| Gene Name(s) | AIR1 ( synonyms: YIL079C ) | |
| Protein Name(s) | Zinc knuckle protein, involved in nuclear RNA processing and degradation as a component of the TRAMP complex, | |
| External Links | ||
| SGD | S000001341 | |
Annotations
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0003676 |
nucleic acid binding |
SGD_REF:S000124036 |
IEA: Inferred from Electronic Annotation |
F |
From SGD | |||
| GO:0005634 |
nucleus |
SGD_REF:S000124038 |
IEA: Inferred from Electronic Annotation |
C |
From SGD | |||
| GO:0005634 |
nucleus |
SGD_REF:S000125578 |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-0191 |
C |
From SGD | ||
| GO:0005730 |
nucleolus |
SGD_REF:S000061434 |
IDA: Inferred from Direct Assay |
C |
From SGD | |||
| GO:0005737 |
cytoplasm |
SGD_REF:S000124038 |
IEA: Inferred from Electronic Annotation |
C |
From SGD | |||
| GO:0005737 |
cytoplasm |
SGD_REF:S000125578 |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-0086 |
C |
From SGD | ||
| GO:0006399 |
tRNA metabolic process |
SGD_REF:S000131114 |
P |
From SGD | ||||
| GO:0008270 |
zinc ion binding |
SGD_REF:S000124036 |
IEA: Inferred from Electronic Annotation |
F |
From SGD | |||
| GO:0008270 |
zinc ion binding |
SGD_REF:S000124038 |
IEA: Inferred from Electronic Annotation |
F |
From SGD | |||
| GO:0009451 |
RNA modification |
SGD_REF:S000131114 |
P |
From SGD | ||||
| GO:0016073 |
snRNA metabolic process |
SGD_REF:S000131114 |
P |
From SGD | ||||
| GO:0018193 |
peptidyl-amino acid modification |
SGD_REF:S000131114 |
P |
From SGD | ||||
| GO:0031499 |
TRAMP complex |
SGD_REF:S000081438 |
IDA: Inferred from Direct Assay |
C |
From SGD | |||
| GO:0031499 |
TRAMP complex |
SGD_REF:S000081864 |
IDA: Inferred from Direct Assay |
C |
From SGD | |||
| GO:0043629 |
ncRNA polyadenylation |
SGD_REF:S000081438 |
IDA: Inferred from Direct Assay |
P |
From SGD | |||
| GO:0046872 |
metal ion binding |
SGD_REF:S000124038 |
IEA: Inferred from Electronic Annotation |
F |
From SGD | |||
| GO:0051049 |
regulation of transport |
SGD_REF:S000131114 |
P |
From SGD | ||||
| GO:0071031 |
nuclear mRNA surveillance of mRNA 3'-end processing |
SGD_REF:S000122136 |
IGI: Inferred from Genetic Interaction |
SGD:S000002334 |
P |
From SGD | ||
| GO:0071035 |
nuclear polyadenylation-dependent rRNA catabolic process |
SGD_REF:S000081843 |
IGI: Inferred from Genetic Interaction |
SGD:S000002334 |
P |
From SGD | ||
| GO:0071035 |
nuclear polyadenylation-dependent rRNA catabolic process |
SGD_REF:S000124708 |
IGI: Inferred from Genetic Interaction |
SGD:S000002334 |
P |
From SGD | ||
| GO:0071036 |
nuclear polyadenylation-dependent snoRNA catabolic process |
SGD_REF:S000081843 |
IGI: Inferred from Genetic Interaction |
SGD:S000002334 |
P |
From SGD | ||
| GO:0071037 |
nuclear polyadenylation-dependent snRNA catabolic process |
SGD_REF:S000081843 |
IGI: Inferred from Genetic Interaction |
SGD:S000002334 |
P |
From SGD | ||
| GO:0071038 |
nuclear polyadenylation-dependent tRNA catabolic process |
SGD_REF:S000081438 |
IDA: Inferred from Direct Assay |
P |
From SGD | |||
| GO:0071038 |
nuclear polyadenylation-dependent tRNA catabolic process |
SGD_REF:S000123616 |
IDA: Inferred from Direct Assay |
P |
From SGD | |||
| GO:0071039 |
nuclear polyadenylation-dependent CUT catabolic process |
SGD_REF:S000126896 |
IGI: Inferred from Genetic Interaction |
SGD:S000002334 |
P |
From SGD | ||
|
contributes_to | GO:0004652 |
polynucleotide adenylyltransferase activity |
SGD_REF:S000081864 |
IDA: Inferred from Direct Assay |
F |
From SGD | ||
|
contributes_to | GO:0004652 |
polynucleotide adenylyltransferase activity |
SGD_REF:S000081864 |
IGI: Inferred from Genetic Interaction |
SGD:S000002334 |
F |
From SGD |
|
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Drees BL et al. (2001) A protein interaction map for cell polarity development. J Cell Biol 154: 549-71 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Vanacova S et al. (2005) A new yeast poly(A) polymerase complex involved in RNA quality control. PLoS Biol 3: e189 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 Wyers F et al. (2005) Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase. Cell 121: 725-37 PubMed GONUTS page
- ↑ Rougemaille M et al. (2007) Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants. EMBO J 26: 2317-26 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 LaCava J et al. (2005) RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell 121: 713-24 PubMed GONUTS page
- ↑ Houseley J et al. (2007) Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control. EMBO J 26: 4996-5006 PubMed GONUTS page
- ↑ Schneider C et al. (2007) The exosome subunit Rrp44 plays a direct role in RNA substrate recognition. Mol Cell 27: 324-31 PubMed GONUTS page
- ↑ Milligan L et al. (2008) A yeast exosome cofactor, Mpp6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts. Mol Cell Biol 28: 5446-57 PubMed GONUTS page
