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HUMAN:SOX2

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Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) SOX2
Protein Name(s) Transcription factor SOX-2
External Links
UniProt P48431
EMBL Z31560
L07335
BC013923
CCDS CCDS3239.1
RefSeq NP_003097.1
UniGene Hs.518438
Hs.732963
PDB 1O4X
2LE4
PDBsum 1O4X
2LE4
ProteinModelPortal P48431
SMR P48431
BioGrid 112540
DIP DIP-59913N
IntAct P48431
STRING 9606.ENSP00000323588
PhosphoSite P48431
DMDM 1351091
MaxQB P48431
PaxDb P48431
PRIDE P48431
DNASU 6657
Ensembl ENST00000325404
GeneID 6657
KEGG hsa:6657
UCSC uc003fkx.3
CTD 6657
GeneCards GC03P181429
GeneReviews SOX2
HGNC HGNC:11195
HPA CAB010648
HPA045725
MIM 184429
206900
neXtProt NX_P48431
Orphanet 77298
98938
2542
3157
PharmGKB PA36032
eggNOG NOG321816
GeneTree ENSGT00760000118988
HOGENOM HOG000231647
HOVERGEN HBG105663
InParanoid P48431
KO K16796
OMA MSALQYN
OrthoDB EOG7TMZVP
PhylomeDB P48431
TreeFam TF351735
Reactome REACT_200670
REACT_200759
REACT_200812
SignaLink P48431
EvolutionaryTrace P48431
GeneWiki SOX2
GenomeRNAi 6657
NextBio 25951
PRO PR:P48431
Proteomes UP000005640
Bgee P48431
CleanEx HS_SOX2
Genevestigator P48431
GO GO:0005737
GO:0005829
GO:0044798
GO:0005634
GO:0005667
GO:0003682
GO:0003677
GO:0035198
GO:0001077
GO:0043565
GO:0003700
GO:0044212
GO:0000976
GO:0021984
GO:0007050
GO:0021987
GO:0006325
GO:0050973
GO:0050910
GO:0048852
GO:0001714
GO:0060441
GO:0001654
GO:0030900
GO:0021879
GO:0021781
GO:0048839
GO:0042472
GO:0060235
GO:0048286
GO:0030539
GO:0090090
GO:0050680
GO:0045665
GO:0045668
GO:0000122
GO:0048663
GO:0097150
GO:0030910
GO:0001649
GO:0046148
GO:0021983
GO:0022409
GO:0030858
GO:0043410
GO:0002052
GO:0045666
GO:0045747
GO:0045944
GO:0045893
GO:0043281
GO:0010468
GO:0006355
GO:0070848
GO:0032526
GO:0009611
GO:0060042
GO:0035019
GO:0042246
GO:0043586
Gene3D 1.10.30.10
InterPro IPR009071
IPR022097
Pfam PF00505
PF12336
SMART SM00398
SUPFAM SSF47095
PROSITE PS50118

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

PMID:19274049[1]

ECO:0000303

author statement without traceable support used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

PMID:19274049[1]

ECO:0000255

match to sequence model evidence used in manual assertion

InterPro:IPR009071

F

Seeded From UniProt

complete

involved_in

GO:0045893

positive regulation of transcription, DNA-templated

PMID:29253717[2]

ECO:0000314

direct assay evidence used in manual assertion

P

  • regulates_transcription_of:(ENSEMBL:ENSG00000137845)
  • occurs_in:(CL:0000540)

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

GO_REF:0000113

ECO:0005556

multiple sequence alignment evidence used in manual assertion

UniProtKB:Q04890

F

Seeded From UniProt

complete

involved_in

GO:0035019

somatic stem cell population maintenance

PMID:19736317[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

PMID:16153702[4]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:16153702[4]

ECO:0000305

curator inference used in manual assertion

GO:0003677

C

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

PMID:16153702[4]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:16153702[4]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0097150

neuronal stem cell population maintenance

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P48432

P

Seeded From UniProt

complete

GO:0043066

negative regulation of apoptosis

PMID:21415100[5]

ECO:0000315

P

Fig 5.

More apoptotic cells could be observed in the tumor tissues of DU145-shRNA1-SOX2 xenograft mice that were treated with Dox and CDDP than those of control mice that were treated under the same condition.

complete

involved_in

GO:0090090

negative regulation of canonical Wnt signaling pathway

PMID:18285410[6]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0070848

response to growth factor

PMID:18187129[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0050680

negative regulation of epithelial cell proliferation

PMID:18268498[8]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0048839

inner ear development

PMID:18407919[9]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:18027866[10]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045893

positive regulation of transcription, DNA-templated

PMID:18407919[9]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045665

negative regulation of neuron differentiation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P48430

P

Seeded From UniProt

complete

enables

GO:0044212

transcription regulatory region DNA binding

PMID:18407919[9]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0043410

positive regulation of MAPK cascade

PMID:18187129[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0043281

regulation of cysteine-type endopeptidase activity involved in apoptotic process

PMID:18268498[8]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0035198

miRNA binding

PMID:18710938[11]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0035019

somatic stem cell population maintenance

PMID:18388306[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0035019

somatic stem cell population maintenance

PMID:19409607[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0030900

forebrain development

PMID:18285410[6]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0021983

pituitary gland development

PMID:18285410[6]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0021781

glial cell fate commitment

PMID:17291498[14]

ECO:0000303

author statement without traceable support used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010468

regulation of gene expression

PMID:18388306[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009611

response to wounding

PMID:17982423[15]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007050

cell cycle arrest

PMID:18268498[8]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

PMID:7849401[16]

ECO:0000303

author statement without traceable support used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006325

chromatin organization

PMID:7849401[16]

ECO:0000303

author statement without traceable support used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:18000303[17]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:18027866[10]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:18027866[10]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:18285410[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:17291498[14]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(CL:0000125)

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:7849401[16]

ECO:0000303

author statement without traceable support used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

PMID:18027866[10]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

PMID:7849401[16]

ECO:0000303

author statement without traceable support used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:19427902[18]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:18285410[6]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:18407919[9]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:7849401[16]

ECO:0000303

author statement without traceable support used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0001654

eye development

PMID:18285410[6]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0001649

osteoblast differentiation

PMID:18187129[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P48432

P

Seeded From UniProt

complete

involved_in

GO:0048839

inner ear development

PMID:21873635[19]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000030807
UniProtKB:P48431

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:21873635[19]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:98364
PANTHER:PTN000030807
RGD:1565646
UniProtKB:P48430
UniProtKB:P48431

P

Seeded From UniProt

complete

involved_in

GO:0045165

cell fate commitment

PMID:21873635[19]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:98364
PANTHER:PTN000030807

P

Seeded From UniProt

complete

part_of

GO:0044798

nuclear transcription factor complex

PMID:21873635[19]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:103559
MGI:MGI:107543
MGI:MGI:98362
MGI:MGI:98363
MGI:MGI:98364
MGI:MGI:98366
MGI:MGI:98660
PANTHER:PTN000030384

C

Seeded From UniProt

complete

involved_in

GO:0030900

forebrain development

PMID:21873635[19]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000030807
UniProtKB:P48431

P

Seeded From UniProt

complete

involved_in

GO:0030182

neuron differentiation

PMID:21873635[19]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000030745
ZFIN:ZDB-GENE-980526-333

P

Seeded From UniProt

complete

involved_in

GO:0030154

cell differentiation

PMID:21873635[19]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:98363
PANTHER:PTN000030384

P

Seeded From UniProt

complete

involved_in

GO:0007417

central nervous system development

PMID:21873635[19]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000030745
ZFIN:ZDB-GENE-980526-333

P

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

PMID:21873635[19]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:103559
MGI:MGI:107543
MGI:MGI:2654070
MGI:MGI:98364
PANTHER:PTN000030384
UniProtKB:P48431
UniProtKB:Q06945

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[19]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0000411
FB:FBgn0005612
FB:FBgn0005613
FB:FBgn0029123
FB:FBgn0036411
MGI:MGI:103559
MGI:MGI:107543
MGI:MGI:98357
MGI:MGI:98359
MGI:MGI:98363
MGI:MGI:98364
MGI:MGI:98366
MGI:MGI:98369
MGI:MGI:98660
PANTHER:PTN000030384
RGD:1565646
RGD:3759
RGD:69351
UniProtKB:P35713
UniProtKB:P35716
UniProtKB:P48430
UniProtKB:P48431
UniProtKB:Q05066
UniProtKB:Q06945
UniProtKB:Q9BT81
UniProtKB:Q9H6I2
WB:WBGene00004771

C

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

PMID:21873635[19]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:103559
MGI:MGI:107543
MGI:MGI:98362
MGI:MGI:98363
MGI:MGI:98364
MGI:MGI:98366
MGI:MGI:98660
PANTHER:PTN000030384
ZFIN:ZDB-GENE-990715-6

F

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:21873635[19]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:98364
PANTHER:PTN000030807

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:21245162[20]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

PMID:20713518[21]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0001714

endodermal cell fate specification

PMID:21245162[20]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:D4A543
ensembl:ENSRNOP00000016236

P

Seeded From UniProt

complete

involved_in

GO:0045597

positive regulation of cell differentiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:D4A543
ensembl:ENSRNOP00000016236

P

Seeded From UniProt

complete

involved_in

GO:0042246

tissue regeneration

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:D4A543
ensembl:ENSRNOP00000016236

P

Seeded From UniProt

complete

involved_in

GO:0022409

positive regulation of cell-cell adhesion

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:D4A543
ensembl:ENSRNOP00000016236

P

Seeded From UniProt

complete

GO:0045289

luciferin monooxygenase activity

PMID:22265740[22]

ECO:0000314

F

In figure 6 B Co-transfection of the SOX2 overexpression vector with the TRKC-LUC Site A + B reporter resulted in a 2.0-fold increase in luciferase activity compared to cells transfected with the empty overexpression vector

complete
CACAO 5071

involved_in

GO:0021984

adenohypophysis development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:D4A543
ensembl:ENSRNOP00000016236

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:D4A543
ensembl:ENSRNOP00000016236

C

Seeded From UniProt

complete

enables

GO:0001228

DNA-binding transcription activator activity, RNA polymerase II-specific

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:D4A543
ensembl:ENSRNOP00000016236

F

Seeded From UniProt

complete

enables

GO:0000976

transcription regulatory region sequence-specific DNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:D4A543
ensembl:ENSRNOP00000016236

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR032643

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR032643

C

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR022097
InterPro:IPR032643

P

Seeded From UniProt

complete

part_of

GO:0005667

transcription factor complex

PMID:19736317[3]

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0035019

somatic stem cell population maintenance

Reactome:R-HSA-452723

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0019221

cytokine-mediated signaling pathway

Reactome:R-HSA-6785807

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

Reactome:R-HSA-6800120
Reactome:R-HSA-6790036
Reactome:R-HSA-5626938
Reactome:R-HSA-480685
Reactome:R-HSA-480204
Reactome:R-HSA-452894
Reactome:R-HSA-2972979
Reactome:R-HSA-2972978
Reactome:R-HSA-2972977
Reactome:R-HSA-2972975
Reactome:R-HSA-2972967
Reactome:R-HSA-2972966
Reactome:R-HSA-2972965
Reactome:R-HSA-2972964
Reactome:R-HSA-2972962
Reactome:R-HSA-2972960
Reactome:R-HSA-2972956
Reactome:R-HSA-2972949
Reactome:R-HSA-2972948
Reactome:R-HSA-1112609

ECO:0000304

author statement supported by traceable reference used in manual assertion




















C

Seeded From UniProt

complete

involved_in

GO:0007275

multicellular organism development

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0217

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Vaquerizas, JM et al. (2009) A census of human transcription factors: function, expression and evolution. Nat. Rev. Genet. 10 252-63 PubMed GONUTS page
  2. Akhter, R et al. (2018) Regulation of ADAM10 by miR-140-5p and potential relevance for Alzheimer's disease. Neurobiol. Aging 63 110-119 PubMed GONUTS page
  3. 3.0 3.1 Stefanovic, S et al. (2009) Interplay of Oct4 with Sox2 and Sox17: a molecular switch from stem cell pluripotency to specifying a cardiac fate. J. Cell Biol. 186 665-73 PubMed GONUTS page
  4. 4.0 4.1 4.2 4.3 Boyer, LA et al. (2005) Core transcriptional regulatory circuitry in human embryonic stem cells. Cell 122 947-56 PubMed GONUTS page
  5. Jia, X et al. (2011) SOX2 promotes tumorigenesis and increases the anti-apoptotic property of human prostate cancer cell. J Mol Cell Biol 3 230-8 PubMed GONUTS page
  6. 6.0 6.1 6.2 6.3 6.4 6.5 Kelberman, D et al. (2008) SOX2 plays a critical role in the pituitary, forebrain, and eye during human embryonic development. J. Clin. Endocrinol. Metab. 93 1865-73 PubMed GONUTS page
  7. 7.0 7.1 7.2 Go, MJ et al. (2008) Forced expression of Sox2 or Nanog in human bone marrow derived mesenchymal stem cells maintains their expansion and differentiation capabilities. Exp. Cell Res. 314 1147-54 PubMed GONUTS page
  8. 8.0 8.1 8.2 Otsubo, T et al. (2008) SOX2 is frequently downregulated in gastric cancers and inhibits cell growth through cell-cycle arrest and apoptosis. Br. J. Cancer 98 824-31 PubMed GONUTS page
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  10. 10.0 10.1 10.2 10.3 Park, ET et al. (2008) Aberrant expression of SOX2 upregulates MUC5AC gastric foveolar mucin in mucinous cancers of the colorectum and related lesions. Int. J. Cancer 122 1253-60 PubMed GONUTS page
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