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HUMAN:PRKN2

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Contents

Species (Taxon ID) Homo sapiens (Human). (taxon:9606)
Gene Name(s) PARK2 ( synonyms: PRKN )
Protein Name(s)
  • E3 ubiquitin-protein ligase parkin
  • Parkinson juvenile disease protein 2
  • Parkinson disease protein 2
External Links
UniProt Identifier PRKN2_HUMAN
UniProt Accessions O60260, A3FG77, A8K975, Q5TFV8, Q6Q2I6, Q8NI41, Q8NI43, Q8NI44, Q8WW07,
EMBL AB009973, EF375726, AF381282, AF381283, AF381286, AK292590, AL445215, AL035697, AL132982, AP000886, AP000887, AP001576, AP001577, AP001578, AP003699, AL035697, AL132982, AL445215, AP000886, AP000887, AP001576, AP001577, AP001578, AP003699, AL132982, AL035697, AL445215, AP000886, AP000887, AP001576, AP001577, AP001578, AP003699, CH471051, BC022014, AY564225,
RefSeq NP_004553.2, NP_054642.2, NP_054643.2,
PDB 1IYF, 2JMO,
IntAct O60260,
Ensembl ENST00000366898,
Pfam PF01485, PF00240,

Annotations

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0004842

ubiquitin-protein ligase activity

PMID:10888878[1]

IDA: Inferred from Direct Assay

F

Figure 5a. Incubation of immunoprecipitated Parkin with ATP, E1, E2, and ubiquitin results in an ubiquitinated signal at 30 kD.

complete

GO:0000422

mitochondrion degradation

PMID:19029340[2]

IDA: Inferred from Direct Assay

P

Figure 4. HeLa cells transfected with the gene for PRKN2 have less mitochondrial mass under depolarizing conditions compared to cells that do not have the parkin gene.

complete

GO:0000209

protein polyubiquitination

PMID:16227987[3]

IDA: Inferred from Direct Assay

P

GO:0005739

mitochondrion

PMID:19029340[2]

IDA: Inferred from Direct Assay

C

Figure 1a and 1b. Human cells treated with CCCP (to depolarize the mitochondrial membrane) have increased levels of Parkin associated with them.

complete

GO:0000209

protein polyubiquitination

PMID:18541373[4]

IDA: Inferred from Direct Assay

P

GO:0000209

protein polyubiquitination

PMID:19880420[5]

IDA: Inferred from Direct Assay

P

GO:0004842

ubiquitin-protein ligase activity

PMID:11078524[6]

IDA: Inferred from Direct Assay

F

Figure 3C shows that Cys421Ala and Cys431Ala mutations significantly decrease the self-ubiquitination of Parkin.

complete

GO:0000422

mitochondrion degradation

PMID:19029340[2]

IMP: Inferred from Mutant Phenotype

P

GO:0004842

ubiquitin-protein ligase activity

PMID:11078524[6]

IDA: Inferred from Direct Assay

F

Figure 1B shows that Parkin selectively interacts with UbcH8.

complete

GO:0001933

negative regulation of protein phosphorylation

PMID:17512523[7]

IDA: Inferred from Direct Assay

P

GO:0004842

ubiquitin-protein ligase activity

PMID:11078524[6]

IDA: Inferred from Direct Assay

F

Figure 4C shows that ubiquitination of CDCrel-1 is significantly increased in the presence of Parkin.

complete

GO:0001963

synaptic transmission, dopaminergic

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

P

GO:0005829

cytosol

PMID:19029340[2]

IDA: Inferred from Direct Assay

C

Figure 1 a and c. Immunostained cells show that parkin is located in the cytosol.

complete

GO:0001964

startle response

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

P

GO:0004842

ubiquitin-protein ligase activity

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

F

GO:0004842

ubiquitin-protein ligase activity

PMID:15728840[8]

IDA: Inferred from Direct Assay

F

GO:0004842

ubiquitin-protein ligase activity

PMID:16227987[3]

IDA: Inferred from Direct Assay

F

GO:0004842

ubiquitin-protein ligase activity

PMID:17097639[9]

IDA: Inferred from Direct Assay

F

GO:0004842

ubiquitin-protein ligase activity

PMID:18541373[4]

IDA: Inferred from Direct Assay

F

GO:0004842

ubiquitin-protein ligase activity

PMID:19880420[5]

IDA: Inferred from Direct Assay

F

GO:0004842

ubiquitin-protein ligase activity

PMID:20889974[10]

IDA: Inferred from Direct Assay

F

GO:0004842

ubiquitin-protein ligase activity

PMID:21376232[11]

IDA: Inferred from Direct Assay

F

GO:0005515

protein binding

PMID:10888878[1]

IPI: Inferred from Physical Interaction

UniProtKB:P68036

F

GO:0005515

protein binding

PMID:11590439[12]

IPI: Inferred from Physical Interaction

UniProtKB:Q9Y6H5

F

GO:0005515

protein binding

PMID:12364339[13]

IPI: Inferred from Physical Interaction

UniProtKB:Q9Y6H5

F

GO:0005515

protein binding

PMID:15603737[14]

IPI: Inferred from Physical Interaction

UniProtKB:Q5QJC9

F

GO:0005515

protein binding

PMID:15728840[8]

IPI: Inferred from Physical Interaction

UniProtKB:Q9Y6H5

F

GO:0005515

protein binding

PMID:16189514[15]

IPI: Inferred from Physical Interaction

UniProtKB:Q15645

F

GO:0005515

protein binding

PMID:16332688[16]

IPI: Inferred from Physical Interaction

UniProtKB:P49792

F

GO:0005515

protein binding

PMID:16352719[17]

IPI: Inferred from Physical Interaction

UniProtKB:Q5S007

F

GO:0005515

protein binding

PMID:17097639[9]

IPI: Inferred from Physical Interaction

UniProtKB:Q99700

F

GO:0005515

protein binding

PMID:20889974[10]

IPI: Inferred from Physical Interaction

UniProtKB:P10415

F

GO:0005515

protein binding

PMID:21376232[11]

IPI: Inferred from Physical Interaction

UniProtKB:Q6NUN9

F

GO:0005634

nucleus

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0539

C

GO:0005634

nucleus

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0191

C

GO:0005737

cytoplasm

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

GO:0005737

cytoplasm

PMID:17512523[7]

IDA: Inferred from Direct Assay

C

GO:0005737

cytoplasm

PMID:21376232[11]

IDA: Inferred from Direct Assay

C

GO:0005739

mitochondrion

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0496

C

GO:0005739

mitochondrion

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0173

C

GO:0005739

mitochondrion

PMID:19029340[2]

IMP: Inferred from Mutant Phenotype

C

GO:0005739

mitochondrion

PMID:20889974[10]

IDA: Inferred from Direct Assay

C

GO:0005783

endoplasmic reticulum

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0256

C

GO:0005783

endoplasmic reticulum

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0095

C

GO:0005794

Golgi apparatus

PMID:17097639[9]

IDA: Inferred from Direct Assay

C

GO:0005829

cytosol

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0091

C

GO:0005829

cytosol

PMID:19029340[2]

IDA: Inferred from Direct Assay

C

GO:0005829

cytosol

PMID:19880420[5]

IDA: Inferred from Direct Assay

C

GO:0005829

cytosol

PMID:20889974[10]

IDA: Inferred from Direct Assay

C

GO:0006511

ubiquitin-dependent protein catabolic process

PMID:10888878[1]

TAS: Traceable Author Statement

P

GO:0006511

ubiquitin-dependent protein catabolic process

PMID:21376232[11]

IDA: Inferred from Direct Assay

P

GO:0006513

protein monoubiquitination

PMID:20889974[10]

IDA: Inferred from Direct Assay

P

GO:0006914

autophagy

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0072

P

GO:0007417

central nervous system development

PMID:9560156[18]

TAS: Traceable Author Statement

P

GO:0007612

learning

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

P

GO:0007626

locomotory behavior

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

P

GO:0008219

cell death

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0523

P

GO:0008219

cell death

PMID:21376232[11]

IDA: Inferred from Direct Assay

P

GO:0008270

zinc ion binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002867

F

GO:0008344

adult locomotory behavior

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

P

GO:0010506

regulation of autophagy

PMID:20889974[10]

IDA: Inferred from Direct Assay

P

GO:0016235

aggresome

PMID:14645198[19]

IDA: Inferred from Direct Assay

C

GO:0016567

protein ubiquitination

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

P

GO:0016874

ligase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0436

F

GO:0016881

acid-amino acid ligase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003977

F

GO:0019538

protein metabolic process

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

P

GO:0019900

kinase binding

PMID:17512523[7]

IPI: Inferred from Physical Interaction

UniProtKB:P53667

F

GO:0019900

kinase binding

PMID:19880420[5]

IPI: Inferred from Physical Interaction

UniProtKB:Q9BXM7

F

GO:0019901

protein kinase binding

PMID:20798600[20]

IPI: Inferred from Physical Interaction

UniProtKB:Q9BXM7

F

GO:0030165

PDZ domain binding

PMID:17512523[7]

IPI: Inferred from Physical Interaction

UniProtKB:P53667

F

GO:0031625

ubiquitin protein ligase binding

PMID:21532592[21]

IPI: Inferred from Physical Interaction

UniProtKB:P68036

F

GO:0032232

negative regulation of actin filament bundle assembly

PMID:17512523[7]

IDA: Inferred from Direct Assay

P

GO:0035249

synaptic transmission, glutamatergic

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

P

GO:0042415

norepinephrine metabolic process

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

P

GO:0042417

dopamine metabolic process

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

P

GO:0042787

protein ubiquitination involved in ubiquitin-dependent protein catabolic process

PMID:17097639[9]

IDA: Inferred from Direct Assay

P

GO:0043005

neuron projection

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

C

GO:0043123

positive regulation of I-kappaB kinase/NF-kappaB cascade

PMID:19880420[5]

IDA: Inferred from Direct Assay

P

GO:0043234

protein complex

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

C

GO:0046872

metal ion binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

GO:0046928

regulation of neurotransmitter secretion

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

P

GO:0048471

perinuclear region of cytoplasm

PMID:17097639[9]

IDA: Inferred from Direct Assay

C

GO:0050804

regulation of synaptic transmission

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

P

GO:0051087

chaperone binding

PMID:15603737[14]

IPI: Inferred from Physical Interaction

UniProtKB:P08107

F

GO:0051583

dopamine uptake

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000063644

P

GO:0051865

protein autoubiquitination

PMID:15728840[8]

IDA: Inferred from Direct Assay

P

GO:0051865

protein autoubiquitination

PMID:17512523[7]

IDA: Inferred from Direct Assay

P

GO:0060548

negative regulation of cell death

PMID:15603737[14]

IDA: Inferred from Direct Assay

P

GO:0070534

protein K63-linked ubiquitination

PMID:15728840[8]

IDA: Inferred from Direct Assay

P

GO:0070534

protein K63-linked ubiquitination

PMID:19880420[5]

IDA: Inferred from Direct Assay

P

GO:0070842

aggresome assembly

PMID:14645198[19]

IMP: Inferred from Mutant Phenotype

P

GO:0070936

protein K48-linked ubiquitination

PMID:21376232[11]

IDA: Inferred from Direct Assay

P

GO:0070997

neuron death

PMID:21376232[11]

IDA: Inferred from Direct Assay

P

GO:0090201

negative regulation of release of cytochrome c from mitochondria

PMID:19880420[5]

IDA: Inferred from Direct Assay

P

GO:2000377

regulation of reactive oxygen species metabolic process

PMID:18541373[4]

IMP: Inferred from Mutant Phenotype

P


Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 Shimura H et al. (2000) Familial Parkinson disease gene product, parkin, is a ubiquitin-protein ligase. Nat Genet 25: 302-5 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 2.5 Narendra D et al. (2008) Parkin is recruited selectively to impaired mitochondria and promotes their autophagy. J Cell Biol 183: 795-803 PubMed GONUTS page
  3. 3.0 3.1 LaVoie MJ et al. (2005) Dopamine covalently modifies and functionally inactivates parkin. Nat Med 11: 1214-21 PubMed GONUTS page
  4. 4.0 4.1 4.2 Yu F & Zhou J (2008) Parkin is ubiquitinated by Nrdp1 and abrogates Nrdp1-induced oxidative stress. Neurosci Lett 440: 4-8 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 5.4 5.5 5.6 Sha D et al. (2010) Phosphorylation of parkin by Parkinson disease-linked kinase PINK1 activates parkin E3 ligase function and NF-kappaB signaling. Hum Mol Genet 19: 352-63 PubMed GONUTS page
  6. 6.0 6.1 6.2 Zhang Y et al. (2000) Parkin functions as an E2-dependent ubiquitin- protein ligase and promotes the degradation of the synaptic vesicle-associated protein, CDCrel-1. Proc Natl Acad Sci U S A 97: 13354-9 PubMed GONUTS page
  7. 7.0 7.1 7.2 7.3 7.4 7.5 Lim MK et al. (2007) Parkin interacts with LIM Kinase 1 and reduces its cofilin-phosphorylation activity via ubiquitination. Exp Cell Res 313: 2858-74 PubMed GONUTS page
  8. 8.0 8.1 8.2 8.3 Lim KL et al. (2005) Parkin mediates nonclassical, proteasomal-independent ubiquitination of synphilin-1: implications for Lewy body formation. J Neurosci 25: 2002-9 PubMed GONUTS page
  9. 9.0 9.1 9.2 9.3 9.4 Huynh DP et al. (2007) Parkin is an E3 ubiquitin-ligase for normal and mutant ataxin-2 and prevents ataxin-2-induced cell death. Exp Neurol 203: 531-41 PubMed GONUTS page
  10. 10.0 10.1 10.2 10.3 10.4 10.5 Chen D et al. (2010) Parkin mono-ubiquitinates Bcl-2 and regulates autophagy. J Biol Chem 285: 38214-23 PubMed GONUTS page
  11. 11.0 11.1 11.2 11.3 11.4 11.5 11.6 Shin JH et al. (2011) PARIS (ZNF746) repression of PGC-1α contributes to neurodegeneration in Parkinson's disease. Cell 144: 689-702 PubMed GONUTS page
  12. Chung KK et al. (2001) Parkin ubiquitinates the alpha-synuclein-interacting protein, synphilin-1: implications for Lewy-body formation in Parkinson disease. Nat Med 7: 1144-50 PubMed GONUTS page
  13. Junn E et al. (2002) Parkin accumulation in aggresomes due to proteasome impairment. J Biol Chem 277: 47870-7 PubMed GONUTS page
  14. 14.0 14.1 14.2 Kalia SK et al. (2004) BAG5 inhibits parkin and enhances dopaminergic neuron degeneration. Neuron 44: 931-45 PubMed GONUTS page
  15. Rual JF et al. (2005) Towards a proteome-scale map of the human protein-protein interaction network. Nature 437: 1173-8 PubMed GONUTS page
  16. Um JW et al. (2006) Parkin ubiquitinates and promotes the degradation of RanBP2. J Biol Chem 281: 3595-603 PubMed GONUTS page
  17. Smith WW et al. (2005) Leucine-rich repeat kinase 2 (LRRK2) interacts with parkin, and mutant LRRK2 induces neuronal degeneration. Proc Natl Acad Sci U S A 102: 18676-81 PubMed GONUTS page
  18. Kitada T et al. (1998) Mutations in the parkin gene cause autosomal recessive juvenile parkinsonism. Nature 392: 605-8 PubMed GONUTS page
  19. 19.0 19.1 Muqit MM et al. (2004) Parkin is recruited into aggresomes in a stress-specific manner: over-expression of parkin reduces aggresome formation but can be dissociated from parkin's effect on neuronal survival. Hum Mol Genet 13: 117-35 PubMed GONUTS page
  20. Geisler S et al. (2010) The PINK1/Parkin-mediated mitophagy is compromised by PD-associated mutations. Autophagy 6: 871-8 PubMed GONUTS page
  21. Wenzel DM et al. (2011) UBCH7 reactivity profile reveals parkin and HHARI to be RING/HECT hybrids. Nature 474: 105-8 PubMed GONUTS page
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