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HUMAN:PRKN2
Contents |
| Species (Taxon ID) | Homo sapiens (Human). (taxon:9606) | |
| Gene Name(s) | PARK2 ( synonyms: PRKN ) | |
| Protein Name(s) |
| |
| External Links | ||
| UniProt Identifier | PRKN2_HUMAN | |
| UniProt Accessions | O60260, A3FG77, A8K975, Q5TFV8, Q6Q2I6, Q8NI41, Q8NI43, Q8NI44, Q8WW07, | |
| EMBL | AB009973, EF375726, AF381282, AF381283, AF381286, AK292590, AL445215, AL035697, AL132982, AP000886, AP000887, AP001576, AP001577, AP001578, AP003699, AL035697, AL132982, AL445215, AP000886, AP000887, AP001576, AP001577, AP001578, AP003699, AL132982, AL035697, AL445215, AP000886, AP000887, AP001576, AP001577, AP001578, AP003699, CH471051, BC022014, AY564225, | |
| RefSeq | NP_004553.2, NP_054642.2, NP_054643.2, | |
| PDB | 1IYF, 2JMO, | |
| IntAct | O60260, | |
| Ensembl | ENST00000366898, | |
| Pfam | PF01485, PF00240, | |
Annotations
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0004842 |
ubiquitin-protein ligase activity |
IDA: Inferred from Direct Assay |
F |
Figure 5a. Incubation of immunoprecipitated Parkin with ATP, E1, E2, and ubiquitin results in an ubiquitinated signal at 30 kD. |
complete | |||
| GO:0000422 |
mitochondrion degradation |
IDA: Inferred from Direct Assay |
P |
Figure 4. HeLa cells transfected with the gene for PRKN2 have less mitochondrial mass under depolarizing conditions compared to cells that do not have the parkin gene. |
complete | |||
| GO:0000209 |
protein polyubiquitination |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0005739 |
mitochondrion |
IDA: Inferred from Direct Assay |
C |
Figure 1a and 1b. Human cells treated with CCCP (to depolarize the mitochondrial membrane) have increased levels of Parkin associated with them. |
complete | |||
| GO:0000209 |
protein polyubiquitination |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0000209 |
protein polyubiquitination |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0004842 |
ubiquitin-protein ligase activity |
IDA: Inferred from Direct Assay |
F |
Figure 3C shows that Cys421Ala and Cys431Ala mutations significantly decrease the self-ubiquitination of Parkin. |
complete | |||
| GO:0000422 |
mitochondrion degradation |
IMP: Inferred from Mutant Phenotype |
P |
|||||
| GO:0004842 |
ubiquitin-protein ligase activity |
IDA: Inferred from Direct Assay |
F |
Figure 1B shows that Parkin selectively interacts with UbcH8. |
complete | |||
| GO:0001933 |
negative regulation of protein phosphorylation |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0004842 |
ubiquitin-protein ligase activity |
IDA: Inferred from Direct Assay |
F |
Figure 4C shows that ubiquitination of CDCrel-1 is significantly increased in the presence of Parkin. |
complete | |||
| GO:0001963 |
synaptic transmission, dopaminergic |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
P |
||||
| GO:0005829 |
cytosol |
IDA: Inferred from Direct Assay |
C |
Figure 1 a and c. Immunostained cells show that parkin is located in the cytosol. |
complete | |||
| GO:0001964 |
startle response |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
P |
||||
| GO:0004842 |
ubiquitin-protein ligase activity |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
F |
||||
| GO:0004842 |
ubiquitin-protein ligase activity |
IDA: Inferred from Direct Assay |
F |
|||||
| GO:0004842 |
ubiquitin-protein ligase activity |
IDA: Inferred from Direct Assay |
F |
|||||
| GO:0004842 |
ubiquitin-protein ligase activity |
IDA: Inferred from Direct Assay |
F |
|||||
| GO:0004842 |
ubiquitin-protein ligase activity |
IDA: Inferred from Direct Assay |
F |
|||||
| GO:0004842 |
ubiquitin-protein ligase activity |
IDA: Inferred from Direct Assay |
F |
|||||
| GO:0004842 |
ubiquitin-protein ligase activity |
IDA: Inferred from Direct Assay |
F |
|||||
| GO:0004842 |
ubiquitin-protein ligase activity |
IDA: Inferred from Direct Assay |
F |
|||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0005634 |
nucleus |
IEA: Inferred from Electronic Annotation |
C |
|||||
| GO:0005634 |
nucleus |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-0191 |
C |
||||
| GO:0005737 |
cytoplasm |
IEA: Inferred from Electronic Annotation |
C |
|||||
| GO:0005737 |
cytoplasm |
IDA: Inferred from Direct Assay |
C |
|||||
| GO:0005737 |
cytoplasm |
IDA: Inferred from Direct Assay |
C |
|||||
| GO:0005739 |
mitochondrion |
IEA: Inferred from Electronic Annotation |
C |
|||||
| GO:0005739 |
mitochondrion |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-0173 |
C |
||||
| GO:0005739 |
mitochondrion |
IMP: Inferred from Mutant Phenotype |
C |
|||||
| GO:0005739 |
mitochondrion |
IDA: Inferred from Direct Assay |
C |
|||||
| GO:0005783 |
endoplasmic reticulum |
IEA: Inferred from Electronic Annotation |
C |
|||||
| GO:0005783 |
endoplasmic reticulum |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-0095 |
C |
||||
| GO:0005794 |
Golgi apparatus |
IDA: Inferred from Direct Assay |
C |
|||||
| GO:0005829 |
cytosol |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-0091 |
C |
||||
| GO:0005829 |
cytosol |
IDA: Inferred from Direct Assay |
C |
|||||
| GO:0005829 |
cytosol |
IDA: Inferred from Direct Assay |
C |
|||||
| GO:0005829 |
cytosol |
IDA: Inferred from Direct Assay |
C |
|||||
| GO:0006511 |
ubiquitin-dependent protein catabolic process |
TAS: Traceable Author Statement |
P |
|||||
| GO:0006511 |
ubiquitin-dependent protein catabolic process |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0006513 |
protein monoubiquitination |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0006914 |
autophagy |
IEA: Inferred from Electronic Annotation |
P |
|||||
| GO:0007417 |
central nervous system development |
TAS: Traceable Author Statement |
P |
|||||
| GO:0007612 |
learning |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
P |
||||
| GO:0007626 |
locomotory behavior |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
P |
||||
| GO:0008219 |
cell death |
IEA: Inferred from Electronic Annotation |
P |
|||||
| GO:0008219 |
cell death |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0008270 |
zinc ion binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0008344 |
adult locomotory behavior |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
P |
||||
| GO:0010506 |
regulation of autophagy |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0016235 |
aggresome |
IDA: Inferred from Direct Assay |
C |
|||||
| GO:0016567 |
protein ubiquitination |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
P |
||||
| GO:0016874 |
ligase activity |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0016881 |
acid-amino acid ligase activity |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0019538 |
protein metabolic process |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
P |
||||
| GO:0019900 |
kinase binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0019900 |
kinase binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0019901 |
protein kinase binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0030165 |
PDZ domain binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0031625 |
ubiquitin protein ligase binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0032232 |
negative regulation of actin filament bundle assembly |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0035249 |
synaptic transmission, glutamatergic |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
P |
||||
| GO:0042415 |
norepinephrine metabolic process |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
P |
||||
| GO:0042417 |
dopamine metabolic process |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
P |
||||
| GO:0042787 |
protein ubiquitination involved in ubiquitin-dependent protein catabolic process |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0043005 |
neuron projection |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
C |
||||
| GO:0043123 |
positive regulation of I-kappaB kinase/NF-kappaB cascade |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0043234 |
protein complex |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
C |
||||
| GO:0046872 |
metal ion binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0046928 |
regulation of neurotransmitter secretion |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
P |
||||
| GO:0048471 |
perinuclear region of cytoplasm |
IDA: Inferred from Direct Assay |
C |
|||||
| GO:0050804 |
regulation of synaptic transmission |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
P |
||||
| GO:0051087 |
chaperone binding |
IPI: Inferred from Physical Interaction |
F |
|||||
| GO:0051583 |
dopamine uptake |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000063644 |
P |
||||
| GO:0051865 |
protein autoubiquitination |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0051865 |
protein autoubiquitination |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0060548 |
negative regulation of cell death |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0070534 |
protein K63-linked ubiquitination |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0070534 |
protein K63-linked ubiquitination |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0070842 |
aggresome assembly |
IMP: Inferred from Mutant Phenotype |
P |
|||||
| GO:0070936 |
protein K48-linked ubiquitination |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0070997 |
neuron death |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:0090201 |
negative regulation of release of cytochrome c from mitochondria |
IDA: Inferred from Direct Assay |
P |
|||||
| GO:2000377 |
regulation of reactive oxygen species metabolic process |
IMP: Inferred from Mutant Phenotype |
P |
| ||||
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Shimura H et al. (2000) Familial Parkinson disease gene product, parkin, is a ubiquitin-protein ligase. Nat Genet 25: 302-5 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 Narendra D et al. (2008) Parkin is recruited selectively to impaired mitochondria and promotes their autophagy. J Cell Biol 183: 795-803 PubMed GONUTS page
- ↑ 3.0 3.1 LaVoie MJ et al. (2005) Dopamine covalently modifies and functionally inactivates parkin. Nat Med 11: 1214-21 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 Yu F & Zhou J (2008) Parkin is ubiquitinated by Nrdp1 and abrogates Nrdp1-induced oxidative stress. Neurosci Lett 440: 4-8 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 Sha D et al. (2010) Phosphorylation of parkin by Parkinson disease-linked kinase PINK1 activates parkin E3 ligase function and NF-kappaB signaling. Hum Mol Genet 19: 352-63 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 Zhang Y et al. (2000) Parkin functions as an E2-dependent ubiquitin- protein ligase and promotes the degradation of the synaptic vesicle-associated protein, CDCrel-1. Proc Natl Acad Sci U S A 97: 13354-9 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 7.3 7.4 7.5 Lim MK et al. (2007) Parkin interacts with LIM Kinase 1 and reduces its cofilin-phosphorylation activity via ubiquitination. Exp Cell Res 313: 2858-74 PubMed GONUTS page
- ↑ 8.0 8.1 8.2 8.3 Lim KL et al. (2005) Parkin mediates nonclassical, proteasomal-independent ubiquitination of synphilin-1: implications for Lewy body formation. J Neurosci 25: 2002-9 PubMed GONUTS page
- ↑ 9.0 9.1 9.2 9.3 9.4 Huynh DP et al. (2007) Parkin is an E3 ubiquitin-ligase for normal and mutant ataxin-2 and prevents ataxin-2-induced cell death. Exp Neurol 203: 531-41 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 10.3 10.4 10.5 Chen D et al. (2010) Parkin mono-ubiquitinates Bcl-2 and regulates autophagy. J Biol Chem 285: 38214-23 PubMed GONUTS page
- ↑ 11.0 11.1 11.2 11.3 11.4 11.5 11.6 Shin JH et al. (2011) PARIS (ZNF746) repression of PGC-1α contributes to neurodegeneration in Parkinson's disease. Cell 144: 689-702 PubMed GONUTS page
- ↑ Chung KK et al. (2001) Parkin ubiquitinates the alpha-synuclein-interacting protein, synphilin-1: implications for Lewy-body formation in Parkinson disease. Nat Med 7: 1144-50 PubMed GONUTS page
- ↑ Junn E et al. (2002) Parkin accumulation in aggresomes due to proteasome impairment. J Biol Chem 277: 47870-7 PubMed GONUTS page
- ↑ 14.0 14.1 14.2 Kalia SK et al. (2004) BAG5 inhibits parkin and enhances dopaminergic neuron degeneration. Neuron 44: 931-45 PubMed GONUTS page
- ↑ Rual JF et al. (2005) Towards a proteome-scale map of the human protein-protein interaction network. Nature 437: 1173-8 PubMed GONUTS page
- ↑ Um JW et al. (2006) Parkin ubiquitinates and promotes the degradation of RanBP2. J Biol Chem 281: 3595-603 PubMed GONUTS page
- ↑ Smith WW et al. (2005) Leucine-rich repeat kinase 2 (LRRK2) interacts with parkin, and mutant LRRK2 induces neuronal degeneration. Proc Natl Acad Sci U S A 102: 18676-81 PubMed GONUTS page
- ↑ Kitada T et al. (1998) Mutations in the parkin gene cause autosomal recessive juvenile parkinsonism. Nature 392: 605-8 PubMed GONUTS page
- ↑ 19.0 19.1 Muqit MM et al. (2004) Parkin is recruited into aggresomes in a stress-specific manner: over-expression of parkin reduces aggresome formation but can be dissociated from parkin's effect on neuronal survival. Hum Mol Genet 13: 117-35 PubMed GONUTS page
- ↑ Geisler S et al. (2010) The PINK1/Parkin-mediated mitophagy is compromised by PD-associated mutations. Autophagy 6: 871-8 PubMed GONUTS page
- ↑ Wenzel DM et al. (2011) UBCH7 reactivity profile reveals parkin and HHARI to be RING/HECT hybrids. Nature 474: 105-8 PubMed GONUTS page