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HUMAN:HDAC3

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Contents

Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) HDAC3
Protein Name(s) Histone deacetylase 3

HD3 RPD3-2 SMAP45

External Links
UniProt O15379
EMBL U66914
U75697
U75696
AF005482
AF039703
AF059650
CH471062
CH471062
BC000614
AF053138
AF053137
AF053139
IPI IPI00006187
IPI00217965
PIR JC5834
RefSeq NP_003874.2
UniGene Hs.519632
ProteinModelPortal O15379
SMR O15379
DIP DIP-24253N
IntAct O15379
MINT MINT-196172
STRING O15379
PhosphoSite O15379
PRIDE O15379
Ensembl ENST00000305264
GeneID 8841
KEGG hsa:8841
UCSC uc003llf.2
CTD 8841
GeneCards GC05M136145
H-InvDB HIX0200752
HGNC HGNC:4854
HPA CAB005583
MIM 605166
neXtProt NX_O15379
PharmGKB PA29228
eggNOG prNOG11179
HOGENOM HBG396919
HOVERGEN HBG057112
InParanoid O15379
OMA NLKMCQH
OrthoDB EOG4MGS79
PhylomeDB O15379
Pathway_Interaction_DB retinoic_acid_pathway
hdac_classi_pathway
hdac_classii_pathway
Reactome REACT_111045
REACT_111102
REACT_22258
BindingDB O15379
DrugBank DB02546
NextBio 33190
PMAP-CutDB O15379
ArrayExpress O15379
Bgee O15379
CleanEx HS_HDAC3
Genevestigator O15379
GermOnline ENSG00000171720
GO GO:0005737
GO:0000118
GO:0005876
GO:0017053
GO:0034739
GO:0042826
GO:0032041
GO:0046969
GO:0046970
GO:0003714
GO:0008134
GO:0006916
GO:0044255
GO:0045786
GO:0046329
GO:0000122
GO:0048011
GO:0051225
GO:0006351
InterPro IPR000286
IPR003084
IPR023801
Gene3D G3DSA:3.40.800.20
KO K11404
PANTHER PTHR10625
Pfam PF00850
PIRSF PIRSF037913
PRINTS PR01270
PR01271

Annotations

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000118

histone deacetylase complex

PMID:12711221[1]

TAS: Traceable Author Statement

C

Seeded From UniProt

GO:0000122

negative regulation of transcription from RNA polymerase II promoter

PMID:12628926[2]

IMP: Inferred from Mutant Phenotype

P

Seeded From UniProt

GO:0000122

negative regulation of transcription from RNA polymerase II promoter

PMID:18854353[3]

IDA: Inferred from Direct Assay

P

Seeded From UniProt

GO:0000785

chromatin

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSRNOP00000060357

C

Seeded From UniProt

GO:0003677

DNA binding

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000037981

F

Seeded From UniProt

GO:0003682

chromatin binding

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000037981

F

Seeded From UniProt

GO:0003714

transcription corepressor activity

PMID:12628926[2]

IMP: Inferred from Mutant Phenotype

F

Seeded From UniProt

GO:0004407

histone deacetylase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003084

F

Seeded From UniProt

GO:0004407

histone deacetylase activity

PMID:10777477[4]

TAS: Traceable Author Statement

F

Seeded From UniProt

GO:0004407

histone deacetylase activity

PMID:12711221[1]

TAS: Traceable Author Statement

F

Seeded From UniProt

GO:0004407

histone deacetylase activity

PMID:16924111[5]

IMP: Inferred from Mutant Phenotype

F

Seeded From UniProt

GO:0004407

histone deacetylase activity

PMID:18326024[6]

IMP: Inferred from Mutant Phenotype

F

Seeded From UniProt

GO:0005515

protein binding

PMID:10898795[7]

IPI: Inferred from Physical Interaction

UniProtKB:Q6W2J9

F

Seeded From UniProt

GO:0005515

protein binding

PMID:11006275[8]

IPI: Inferred from Physical Interaction

UniProtKB:Q8CBD1

F

Seeded From UniProt

GO:0005515

protein binding

PMID:11006275[8]

IPI: Inferred from Physical Interaction

UniProtKB:Q8CBD1

F

Seeded From UniProt

GO:0005515

protein binding

PMID:11259576[9]

IPI: Inferred from Physical Interaction

UniProtKB:P29590-5

F

Seeded From UniProt

GO:0005515

protein binding

PMID:11861901[10]

IPI: Inferred from Physical Interaction

UniProtKB:Q969S8

F

Seeded From UniProt

GO:0005515

protein binding

PMID:15016912[11]

IPI: Inferred from Physical Interaction

UniProtKB:P54253

F

Seeded From UniProt

GO:0005515

protein binding

PMID:16432238[12]

IPI: Inferred from Physical Interaction

UniProtKB:Q9UIS9

F

Seeded From UniProt

GO:0005515

protein binding

PMID:16924111[5]

IPI: Inferred from Physical Interaction

UniProtKB:O75496

F

Seeded From UniProt

GO:0005515

protein binding

PMID:16924111[5]

IPI: Inferred from Physical Interaction

UniProtKB:Q01664

F

Seeded From UniProt

GO:0005515

protein binding

PMID:16924111[5]

IPI: Inferred from Physical Interaction

UniProtKB:Q9Y618

F

Seeded From UniProt

GO:0005515

protein binding

PMID:17172643[13]

IPI: Inferred from Physical Interaction

UniProtKB:O43809

F

Seeded From UniProt

GO:0005515

protein binding

PMID:18854353[3]

IPI: Inferred from Physical Interaction

UniProtKB:Q6KC79

F

Seeded From UniProt

GO:0005515

protein binding

PMID:19409814[14]

IPI: Inferred from Physical Interaction

UniProtKB:Q8N5F7

F

Seeded From UniProt

GO:0005515

protein binding

PMID:21258344[15]

IPI: Inferred from Physical Interaction

UniProtKB:O75376

F

Seeded From UniProt

GO:0005634

nucleus

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0539

C

Seeded From UniProt

GO:0005634

nucleus

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSRNOP00000060357

C

Seeded From UniProt

GO:0005634

nucleus

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0191

C

Seeded From UniProt

GO:0005634

nucleus

PMID:12711221[1]

TAS: Traceable Author Statement

C

Seeded From UniProt

GO:0005634

nucleus

PMID:18326024[6]

IDA: Inferred from Direct Assay

C

Seeded From UniProt

GO:0005634

nucleus

PMID:18347167[16]

IDA: Inferred from Direct Assay

C

Seeded From UniProt

GO:0005634

nucleus

PMID:9501169[17]

TAS: Traceable Author Statement

C

Seeded From UniProt

GO:0005654

nucleoplasm

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSRNOP00000060357

C

Seeded From UniProt

GO:0005654

nucleoplasm

Reactome:REACT_19175

TAS: Traceable Author Statement

C

Seeded From UniProt

GO:0005654

nucleoplasm

Reactome:REACT_19283

TAS: Traceable Author Statement

C

Seeded From UniProt

GO:0005737

cytoplasm

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSRNOP00000060357

C

Seeded From UniProt

GO:0005737

cytoplasm

PMID:12711221[1]

TAS: Traceable Author Statement

C

Seeded From UniProt

GO:0005876

spindle microtubule

PMID:18326024[6]

IDA: Inferred from Direct Assay

C

Seeded From UniProt

GO:0006351

transcription, DNA-dependent

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded From UniProt

GO:0006355

regulation of transcription, DNA-dependent

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0805

P

Seeded From UniProt

GO:0006476

protein deacetylation

PMID:17172643[13]

IDA: Inferred from Direct Assay

P

Seeded From UniProt

GO:0006916

anti-apoptosis

PMID:10777477[4]

TAS: Traceable Author Statement

P

Seeded From UniProt

GO:0007346

regulation of mitotic cell cycle

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000037981

P

Seeded From UniProt

GO:0008134

transcription factor binding

PMID:12711221[1]

TAS: Traceable Author Statement

F

Seeded From UniProt

GO:0016568

chromatin modification

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0156

P

Seeded From UniProt

GO:0016568

chromatin modification

PMID:12711221[1]

TAS: Traceable Author Statement

P

Seeded From UniProt

GO:0016575

histone deacetylation

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003084

P

Seeded From UniProt

GO:0016575

histone deacetylation

PMID:10777477[4]

TAS: Traceable Author Statement

P

Seeded From UniProt

GO:0016575

histone deacetylation

PMID:12711221[1]

TAS: Traceable Author Statement

P

Seeded From UniProt

GO:0016575

histone deacetylation

PMID:16924111[5]

IMP: Inferred from Mutant Phenotype

P

Seeded From UniProt

GO:0016575

histone deacetylation

PMID:18326024[6]

IMP: Inferred from Mutant Phenotype

P

Seeded From UniProt

GO:0016787

hydrolase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded From UniProt

GO:0017053

transcriptional repressor complex

PMID:11804585[18]

IDA: Inferred from Direct Assay

C

Seeded From UniProt

GO:0017053

transcriptional repressor complex

PMID:12628926[2]

IDA: Inferred from Direct Assay

C

Seeded From UniProt

GO:0031078

histone deacetylase activity (H3-K14 specific)

GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:3.5.1.98

F

Seeded From UniProt

GO:0032041

NAD-dependent histone deacetylase activity (H3-K14 specific)

GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:3.5.1.98

F

Seeded From UniProt

GO:0032129

histone deacetylase activity (H3-K9 specific)

GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:3.5.1.98

F

Seeded From UniProt

GO:0032922

circadian regulation of gene expression

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000037981

P

Seeded From UniProt

GO:0033558

protein deacetylase activity

PMID:17172643[13]

IDA: Inferred from Direct Assay

F

Seeded From UniProt

GO:0034739

histone deacetylase activity (H3-K16 specific)

GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:3.5.1.98

F

Seeded From UniProt

GO:0040014

regulation of multicellular organism growth

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSMUSP00000037981

P

Seeded From UniProt

GO:0042493

response to drug

GO_REF:0000019

IEA: Inferred from Electronic Annotation

Ensembl:ENSRNOP00000060357

P

Seeded From UniProt

GO:0042826

histone deacetylase binding

PMID:10869435[19]

IPI: Inferred from Physical Interaction

UniProtKB:P56524

F

Seeded From UniProt

GO:0042826

histone deacetylase binding

PMID:10869435[19]

IPI: Inferred from Physical Interaction

UniProtKB:Q9UQL6

F

Seeded From UniProt

GO:0042826

histone deacetylase binding

PMID:12590135[20]

IPI: Inferred from Physical Interaction

UniProtKB:Q9UKV0

F

Seeded From UniProt

GO:0044255

cellular lipid metabolic process

Reactome:REACT_22279

TAS: Traceable Author Statement

P

Seeded From UniProt

GO:0044281

small molecule metabolic process

Reactome:REACT_111217

TAS: Traceable Author Statement

P

Seeded From UniProt

GO:0045786

negative regulation of cell cycle

Reactome:REACT_13695

TAS: Traceable Author Statement

P

Seeded From UniProt

GO:0045892

negative regulation of transcription, DNA-dependent

PMID:16924111[5]

IMP: Inferred from Mutant Phenotype

P

Seeded From UniProt

GO:0046329

negative regulation of JNK cascade

PMID:11931768[21]

IMP: Inferred from Mutant Phenotype

P

Seeded From UniProt

GO:0046969

NAD-dependent histone deacetylase activity (H3-K9 specific)

GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:3.5.1.98

F

Seeded From UniProt

GO:0046970

NAD-dependent histone deacetylase activity (H4-K16 specific)

GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:3.5.1.98

F

Seeded From UniProt

GO:0048011

nerve growth factor receptor signaling pathway

Reactome:REACT_11061

TAS: Traceable Author Statement

P

Seeded From UniProt

GO:0048011

nerve growth factor receptor signaling pathway

Reactome:REACT_13776

TAS: Traceable Author Statement

P

Seeded From UniProt

GO:0051225

spindle assembly

PMID:18326024[6]

IMP: Inferred from Mutant Phenotype

P

Seeded From UniProt

GO:0010832

negative regulation of myotube differentiation

PMID:10983972[22]

IMP: Inferred from Mutant Phenotype

P

Seeded From UniProt

GO:0006303

double-strand break repair via nonhomologous end joining

PMID:21075309[23]

IMP: Inferred from Mutant Phenotype

P

Figure 1, F

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Verdin E et al. (2003) Class II histone deacetylases: versatile regulators. Trends Genet 19: 286-93 PubMed GONUTS page
  2. 2.0 2.1 2.2 Yoon HG et al. (2003) Purification and functional characterization of the human N-CoR complex: the roles of HDAC3, TBL1 and TBLR1. EMBO J 22: 1336-46 PubMed GONUTS page
  3. 3.0 3.1 Jahnke P et al. (2008) The Cohesin loading factor NIPBL recruits histone deacetylases to mediate local chromatin modifications. Nucleic Acids Res 36: 6450-8 PubMed GONUTS page
  4. 4.0 4.1 4.2 Juan LJ et al. (2000) Histone deacetylases specifically down-regulate p53-dependent gene activation. J Biol Chem 275: 20436-43 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 5.4 5.5 Kim MY et al. (2006) A repressor complex, AP4 transcription factor and geminin, negatively regulates expression of target genes in nonneuronal cells. Proc Natl Acad Sci U S A 103: 13074-9 PubMed GONUTS page
  6. 6.0 6.1 6.2 6.3 6.4 Ishii S et al. (2008) Histone deacetylase 3 localizes to the mitotic spindle and is required for kinetochore-microtubule attachment. Proc Natl Acad Sci U S A 105: 4179-84 PubMed GONUTS page
  7. Huynh KD et al. (2000) BCoR, a novel corepressor involved in BCL-6 repression. Genes Dev 14: 1810-23 PubMed GONUTS page
  8. 8.0 8.1 Wei LN et al. (2000) Receptor-interacting protein 140 directly recruits histone deacetylases for gene silencing. J Biol Chem 275: 40782-7 PubMed GONUTS page
  9. Wu WS et al. (2001) The growth suppressor PML represses transcription by functionally and physically interacting with histone deacetylases. Mol Cell Biol 21: 2259-68 PubMed GONUTS page
  10. Tong JJ et al. (2002) Identification of HDAC10, a novel class II human histone deacetylase containing a leucine-rich domain. Nucleic Acids Res 30: 1114-23 PubMed GONUTS page
  11. Tsai CC et al. (2004) Ataxin 1, a SCA1 neurodegenerative disorder protein, is functionally linked to the silencing mediator of retinoid and thyroid hormone receptors. Proc Natl Acad Sci U S A 101: 4047-52 PubMed GONUTS page
  12. Villa R et al. (2006) The methyl-CpG binding protein MBD1 is required for PML-RARalpha function. Proc Natl Acad Sci U S A 103: 1400-5 PubMed GONUTS page
  13. 13.0 13.1 13.2 Shimazu T et al. (2007) Multiple histone deacetylases and the CREB-binding protein regulate pre-mRNA 3'-end processing. J Biol Chem 282: 4470-8 PubMed GONUTS page
  14. Pajerowski AG et al. (2009) NKAP is a transcriptional repressor of notch signaling and is required for T cell development. Immunity 30: 696-707 PubMed GONUTS page
  15. Bantscheff M et al. (2011) Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes. Nat Biotechnol 29: 255-65 PubMed GONUTS page
  16. Weichert W et al. (2008) Class I histone deacetylase expression has independent prognostic impact in human colorectal cancer: specific role of class I histone deacetylases in vitro and in vivo. Clin Cancer Res 14: 1669-77 PubMed GONUTS page
  17. Emiliani S et al. (1998) Characterization of a human RPD3 ortholog, HDAC3. Proc Natl Acad Sci U S A 95: 2795-800 PubMed GONUTS page
  18. Fischle W et al. (2002) Enzymatic activity associated with class II HDACs is dependent on a multiprotein complex containing HDAC3 and SMRT/N-CoR. Mol Cell 9: 45-57 PubMed GONUTS page
  19. 19.0 19.1 Grozinger CM & Schreiber SL (2000) Regulation of histone deacetylase 4 and 5 and transcriptional activity by 14-3-3-dependent cellular localization. Proc Natl Acad Sci U S A 97: 7835-40 PubMed GONUTS page
  20. Petrie K et al. (2003) The histone deacetylase 9 gene encodes multiple protein isoforms. J Biol Chem 278: 16059-72 PubMed GONUTS page
  21. Zhang J et al. (2002) The N-CoR-HDAC3 nuclear receptor corepressor complex inhibits the JNK pathway through the integral subunit GPS2. Mol Cell 9: 611-23 PubMed GONUTS page
  22. Lu J et al. (2000) Regulation of skeletal myogenesis by association of the MEF2 transcription factor with class II histone deacetylases. Mol Cell 6: 233-44 PubMed GONUTS page
  23. Bhaskara S et al. (2010) Hdac3 is essential for the maintenance of chromatin structure and genome stability. Cancer Cell 18: 436-47 PubMed GONUTS page
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