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HUMAN:HDAC3
Contents |
| Species (Taxon ID) | Homo sapiens (Human). (9606) | |
| Gene Name(s) | HDAC3 | |
| Protein Name(s) | Histone deacetylase 3
HD3 RPD3-2 SMAP45 | |
| External Links | ||
| UniProt | O15379 | |
| EMBL | U66914 U75697 U75696 AF005482 AF039703 AF059650 CH471062 CH471062 BC000614 AF053138 AF053137 AF053139 | |
| IPI | IPI00006187 IPI00217965 | |
| PIR | JC5834 | |
| RefSeq | NP_003874.2 | |
| UniGene | Hs.519632 | |
| ProteinModelPortal | O15379 | |
| SMR | O15379 | |
| DIP | DIP-24253N | |
| IntAct | O15379 | |
| MINT | MINT-196172 | |
| STRING | O15379 | |
| PhosphoSite | O15379 | |
| PRIDE | O15379 | |
| Ensembl | ENST00000305264 | |
| GeneID | 8841 | |
| KEGG | hsa:8841 | |
| UCSC | uc003llf.2 | |
| CTD | 8841 | |
| GeneCards | GC05M136145 | |
| H-InvDB | HIX0200752 | |
| HGNC | HGNC:4854 | |
| HPA | CAB005583 | |
| MIM | 605166 | |
| neXtProt | NX_O15379 | |
| PharmGKB | PA29228 | |
| eggNOG | prNOG11179 | |
| HOGENOM | HBG396919 | |
| HOVERGEN | HBG057112 | |
| InParanoid | O15379 | |
| OMA | NLKMCQH | |
| OrthoDB | EOG4MGS79 | |
| PhylomeDB | O15379 | |
| Pathway_Interaction_DB | retinoic_acid_pathway hdac_classi_pathway hdac_classii_pathway | |
| Reactome | REACT_111045 REACT_111102 REACT_22258 | |
| BindingDB | O15379 | |
| DrugBank | DB02546 | |
| NextBio | 33190 | |
| PMAP-CutDB | O15379 | |
| ArrayExpress | O15379 | |
| Bgee | O15379 | |
| CleanEx | HS_HDAC3 | |
| Genevestigator | O15379 | |
| GermOnline | ENSG00000171720 | |
| GO | GO:0005737 GO:0000118 GO:0005876 GO:0017053 GO:0034739 GO:0042826 GO:0032041 GO:0046969 GO:0046970 GO:0003714 GO:0008134 GO:0006916 GO:0044255 GO:0045786 GO:0046329 GO:0000122 GO:0048011 GO:0051225 GO:0006351 | |
| InterPro | IPR000286 IPR003084 IPR023801 | |
| Gene3D | G3DSA:3.40.800.20 | |
| KO | K11404 | |
| PANTHER | PTHR10625 | |
| Pfam | PF00850 | |
| PIRSF | PIRSF037913 | |
| PRINTS | PR01270 PR01271 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0000118 |
histone deacetylase complex |
TAS: Traceable Author Statement |
|
C |
Seeded From UniProt |
|||
| GO:0000122 |
negative regulation of transcription from RNA polymerase II promoter |
IMP: Inferred from Mutant Phenotype |
|
P |
Seeded From UniProt |
|||
| GO:0000122 |
negative regulation of transcription from RNA polymerase II promoter |
IDA: Inferred from Direct Assay |
|
P |
Seeded From UniProt |
|||
| GO:0000785 |
chromatin |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSRNOP00000060357 |
C |
Seeded From UniProt |
|||
| GO:0003677 |
DNA binding |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000037981 |
F |
Seeded From UniProt |
|||
| GO:0003682 |
chromatin binding |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000037981 |
F |
Seeded From UniProt |
|||
| GO:0003714 |
transcription corepressor activity |
IMP: Inferred from Mutant Phenotype |
|
F |
Seeded From UniProt |
|||
| GO:0004407 |
histone deacetylase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded From UniProt |
||||
| GO:0004407 |
histone deacetylase activity |
TAS: Traceable Author Statement |
|
F |
Seeded From UniProt |
|||
| GO:0004407 |
histone deacetylase activity |
TAS: Traceable Author Statement |
|
F |
Seeded From UniProt |
|||
| GO:0004407 |
histone deacetylase activity |
IMP: Inferred from Mutant Phenotype |
|
F |
Seeded From UniProt |
|||
| GO:0004407 |
histone deacetylase activity |
IMP: Inferred from Mutant Phenotype |
|
F |
Seeded From UniProt |
|||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0005634 |
nucleus |
IEA: Inferred from Electronic Annotation |
C |
Seeded From UniProt |
||||
| GO:0005634 |
nucleus |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSRNOP00000060357 |
C |
Seeded From UniProt |
|||
| GO:0005634 |
nucleus |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-0191 |
C |
Seeded From UniProt |
|||
| GO:0005634 |
nucleus |
TAS: Traceable Author Statement |
|
C |
Seeded From UniProt |
|||
| GO:0005634 |
nucleus |
IDA: Inferred from Direct Assay |
|
C |
Seeded From UniProt |
|||
| GO:0005634 |
nucleus |
IDA: Inferred from Direct Assay |
|
C |
Seeded From UniProt |
|||
| GO:0005634 |
nucleus |
TAS: Traceable Author Statement |
|
C |
Seeded From UniProt |
|||
| GO:0005654 |
nucleoplasm |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSRNOP00000060357 |
C |
Seeded From UniProt |
|||
| GO:0005654 |
nucleoplasm |
Reactome:REACT_19175 |
TAS: Traceable Author Statement |
|
C |
Seeded From UniProt |
||
| GO:0005654 |
nucleoplasm |
Reactome:REACT_19283 |
TAS: Traceable Author Statement |
|
C |
Seeded From UniProt |
||
| GO:0005737 |
cytoplasm |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSRNOP00000060357 |
C |
Seeded From UniProt |
|||
| GO:0005737 |
cytoplasm |
TAS: Traceable Author Statement |
|
C |
Seeded From UniProt |
|||
| GO:0005876 |
spindle microtubule |
IDA: Inferred from Direct Assay |
|
C |
Seeded From UniProt |
|||
| GO:0006351 |
transcription, DNA-dependent |
IEA: Inferred from Electronic Annotation |
P |
Seeded From UniProt |
||||
| GO:0006355 |
regulation of transcription, DNA-dependent |
IEA: Inferred from Electronic Annotation |
P |
Seeded From UniProt |
||||
| GO:0006476 |
protein deacetylation |
IDA: Inferred from Direct Assay |
|
P |
Seeded From UniProt |
|||
| GO:0006916 |
anti-apoptosis |
TAS: Traceable Author Statement |
|
P |
Seeded From UniProt |
|||
| GO:0007346 |
regulation of mitotic cell cycle |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000037981 |
P |
Seeded From UniProt |
|||
| GO:0008134 |
transcription factor binding |
TAS: Traceable Author Statement |
|
F |
Seeded From UniProt |
|||
| GO:0016568 |
chromatin modification |
IEA: Inferred from Electronic Annotation |
P |
Seeded From UniProt |
||||
| GO:0016568 |
chromatin modification |
TAS: Traceable Author Statement |
|
P |
Seeded From UniProt |
|||
| GO:0016575 |
histone deacetylation |
IEA: Inferred from Electronic Annotation |
P |
Seeded From UniProt |
||||
| GO:0016575 |
histone deacetylation |
TAS: Traceable Author Statement |
|
P |
Seeded From UniProt |
|||
| GO:0016575 |
histone deacetylation |
TAS: Traceable Author Statement |
|
P |
Seeded From UniProt |
|||
| GO:0016575 |
histone deacetylation |
IMP: Inferred from Mutant Phenotype |
|
P |
Seeded From UniProt |
|||
| GO:0016575 |
histone deacetylation |
IMP: Inferred from Mutant Phenotype |
|
P |
Seeded From UniProt |
|||
| GO:0016787 |
hydrolase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded From UniProt |
||||
| GO:0017053 |
transcriptional repressor complex |
IDA: Inferred from Direct Assay |
|
C |
Seeded From UniProt |
|||
| GO:0017053 |
transcriptional repressor complex |
IDA: Inferred from Direct Assay |
|
C |
Seeded From UniProt |
|||
| GO:0031078 |
histone deacetylase activity (H3-K14 specific) |
IEA: Inferred from Electronic Annotation |
F |
Seeded From UniProt |
||||
| GO:0032041 |
NAD-dependent histone deacetylase activity (H3-K14 specific) |
IEA: Inferred from Electronic Annotation |
F |
Seeded From UniProt |
||||
| GO:0032129 |
histone deacetylase activity (H3-K9 specific) |
IEA: Inferred from Electronic Annotation |
F |
Seeded From UniProt |
||||
| GO:0032922 |
circadian regulation of gene expression |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000037981 |
P |
Seeded From UniProt |
|||
| GO:0033558 |
protein deacetylase activity |
IDA: Inferred from Direct Assay |
|
F |
Seeded From UniProt |
|||
| GO:0034739 |
histone deacetylase activity (H3-K16 specific) |
IEA: Inferred from Electronic Annotation |
F |
Seeded From UniProt |
||||
| GO:0040014 |
regulation of multicellular organism growth |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSMUSP00000037981 |
P |
Seeded From UniProt |
|||
| GO:0042493 |
response to drug |
IEA: Inferred from Electronic Annotation |
Ensembl:ENSRNOP00000060357 |
P |
Seeded From UniProt |
|||
| GO:0042826 |
histone deacetylase binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0042826 |
histone deacetylase binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0042826 |
histone deacetylase binding |
IPI: Inferred from Physical Interaction |
F |
Seeded From UniProt |
||||
| GO:0044255 |
cellular lipid metabolic process |
Reactome:REACT_22279 |
TAS: Traceable Author Statement |
|
P |
Seeded From UniProt |
||
| GO:0044281 |
small molecule metabolic process |
Reactome:REACT_111217 |
TAS: Traceable Author Statement |
|
P |
Seeded From UniProt |
||
| GO:0045786 |
negative regulation of cell cycle |
Reactome:REACT_13695 |
TAS: Traceable Author Statement |
|
P |
Seeded From UniProt |
||
| GO:0045892 |
negative regulation of transcription, DNA-dependent |
IMP: Inferred from Mutant Phenotype |
|
P |
Seeded From UniProt |
|||
| GO:0046329 |
negative regulation of JNK cascade |
IMP: Inferred from Mutant Phenotype |
|
P |
Seeded From UniProt |
|||
| GO:0046969 |
NAD-dependent histone deacetylase activity (H3-K9 specific) |
IEA: Inferred from Electronic Annotation |
F |
Seeded From UniProt |
||||
| GO:0046970 |
NAD-dependent histone deacetylase activity (H4-K16 specific) |
IEA: Inferred from Electronic Annotation |
F |
Seeded From UniProt |
||||
| GO:0048011 |
nerve growth factor receptor signaling pathway |
Reactome:REACT_11061 |
TAS: Traceable Author Statement |
|
P |
Seeded From UniProt |
||
| GO:0048011 |
nerve growth factor receptor signaling pathway |
Reactome:REACT_13776 |
TAS: Traceable Author Statement |
|
P |
Seeded From UniProt |
||
| GO:0051225 |
spindle assembly |
IMP: Inferred from Mutant Phenotype |
|
P |
Seeded From UniProt |
|||
| GO:0010832 |
negative regulation of myotube differentiation |
IMP: Inferred from Mutant Phenotype |
|
P |
Seeded From UniProt |
|||
| GO:0006303 |
double-strand break repair via nonhomologous end joining |
IMP: Inferred from Mutant Phenotype |
P |
Figure 1, F |
complete | |||
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Verdin E et al. (2003) Class II histone deacetylases: versatile regulators. Trends Genet 19: 286-93 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Yoon HG et al. (2003) Purification and functional characterization of the human N-CoR complex: the roles of HDAC3, TBL1 and TBLR1. EMBO J 22: 1336-46 PubMed GONUTS page
- ↑ 3.0 3.1 Jahnke P et al. (2008) The Cohesin loading factor NIPBL recruits histone deacetylases to mediate local chromatin modifications. Nucleic Acids Res 36: 6450-8 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 Juan LJ et al. (2000) Histone deacetylases specifically down-regulate p53-dependent gene activation. J Biol Chem 275: 20436-43 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Kim MY et al. (2006) A repressor complex, AP4 transcription factor and geminin, negatively regulates expression of target genes in nonneuronal cells. Proc Natl Acad Sci U S A 103: 13074-9 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 6.3 6.4 Ishii S et al. (2008) Histone deacetylase 3 localizes to the mitotic spindle and is required for kinetochore-microtubule attachment. Proc Natl Acad Sci U S A 105: 4179-84 PubMed GONUTS page
- ↑ Huynh KD et al. (2000) BCoR, a novel corepressor involved in BCL-6 repression. Genes Dev 14: 1810-23 PubMed GONUTS page
- ↑ 8.0 8.1 Wei LN et al. (2000) Receptor-interacting protein 140 directly recruits histone deacetylases for gene silencing. J Biol Chem 275: 40782-7 PubMed GONUTS page
- ↑ Wu WS et al. (2001) The growth suppressor PML represses transcription by functionally and physically interacting with histone deacetylases. Mol Cell Biol 21: 2259-68 PubMed GONUTS page
- ↑ Tong JJ et al. (2002) Identification of HDAC10, a novel class II human histone deacetylase containing a leucine-rich domain. Nucleic Acids Res 30: 1114-23 PubMed GONUTS page
- ↑ Tsai CC et al. (2004) Ataxin 1, a SCA1 neurodegenerative disorder protein, is functionally linked to the silencing mediator of retinoid and thyroid hormone receptors. Proc Natl Acad Sci U S A 101: 4047-52 PubMed GONUTS page
- ↑ Villa R et al. (2006) The methyl-CpG binding protein MBD1 is required for PML-RARalpha function. Proc Natl Acad Sci U S A 103: 1400-5 PubMed GONUTS page
- ↑ 13.0 13.1 13.2 Shimazu T et al. (2007) Multiple histone deacetylases and the CREB-binding protein regulate pre-mRNA 3'-end processing. J Biol Chem 282: 4470-8 PubMed GONUTS page
- ↑ Pajerowski AG et al. (2009) NKAP is a transcriptional repressor of notch signaling and is required for T cell development. Immunity 30: 696-707 PubMed GONUTS page
- ↑ Bantscheff M et al. (2011) Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes. Nat Biotechnol 29: 255-65 PubMed GONUTS page
- ↑ Weichert W et al. (2008) Class I histone deacetylase expression has independent prognostic impact in human colorectal cancer: specific role of class I histone deacetylases in vitro and in vivo. Clin Cancer Res 14: 1669-77 PubMed GONUTS page
- ↑ Emiliani S et al. (1998) Characterization of a human RPD3 ortholog, HDAC3. Proc Natl Acad Sci U S A 95: 2795-800 PubMed GONUTS page
- ↑ Fischle W et al. (2002) Enzymatic activity associated with class II HDACs is dependent on a multiprotein complex containing HDAC3 and SMRT/N-CoR. Mol Cell 9: 45-57 PubMed GONUTS page
- ↑ 19.0 19.1 Grozinger CM & Schreiber SL (2000) Regulation of histone deacetylase 4 and 5 and transcriptional activity by 14-3-3-dependent cellular localization. Proc Natl Acad Sci U S A 97: 7835-40 PubMed GONUTS page
- ↑ Petrie K et al. (2003) The histone deacetylase 9 gene encodes multiple protein isoforms. J Biol Chem 278: 16059-72 PubMed GONUTS page
- ↑ Zhang J et al. (2002) The N-CoR-HDAC3 nuclear receptor corepressor complex inhibits the JNK pathway through the integral subunit GPS2. Mol Cell 9: 611-23 PubMed GONUTS page
- ↑ Lu J et al. (2000) Regulation of skeletal myogenesis by association of the MEF2 transcription factor with class II histone deacetylases. Mol Cell 6: 233-44 PubMed GONUTS page
- ↑ Bhaskara S et al. (2010) Hdac3 is essential for the maintenance of chromatin structure and genome stability. Cancer Cell 18: 436-47 PubMed GONUTS page