GONUTS is under stress! The website is currently experiencing long-wait times and frequent time-outs due to the record number of students, groups, and annotations related to CACAO this semester. We are currently working on increasing performance -- please accept our apologies for the technical difficulties.
You can help reduce stress on the server by:
- not reloading pages frequently - this just adds
- opening links in new windows (so you can read the old page)
FB:Trf2
Contents |
| Species (Taxon ID) | Drosophila melanogaster (fruit fly) (taxon:7227) | |
| Gene Name(s) | Trf2 ( synonyms: CG11195, CG18009, TATA box-binding protein related factor 2, TBP related factor 2, TBP-like factor, TBP-related factor 2, TLF, TRF2, dTRF2, dTrf2, l(1)G0039, l(1)G0071, l(1)G0295, l(1)G0425, lethal (1) G0039, lethal (1) G0071, lethal (1) G0295, lethal (1) G0425, p79/TRF2, trf2 ) | |
| Protein Name(s) | TATA box binding protein-related factor 2, | |
| External Links | ||
| FB | FBgn0261793 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0001673 |
male germ cell nucleus |
FB:FBrf0192356 |
IDA: Inferred from Direct Assay |
C |
From FB |
|||
| GO:0001674 |
female germ cell nucleus |
FB:FBrf0192356 |
IDA: Inferred from Direct Assay |
C |
From FB |
|||
| GO:0003677 |
DNA binding |
FB:FBrf0174215 |
IEA: Inferred from Electronic Annotation |
F |
From FB |
|||
| GO:0003700 |
sequence-specific DNA binding transcription factor activity |
FB:FBrf0155489 |
IDA: Inferred from Direct Assay |
F |
From FB |
|||
| GO:0003700 |
sequence-specific DNA binding transcription factor activity |
FB:FBrf0162294 |
TAS: Traceable Author Statement |
F |
From FB |
|||
| GO:0005634 |
nucleus |
FB:FBrf0155489 |
IDA: Inferred from Direct Assay |
C |
From FB |
|||
| GO:0005634 |
nucleus |
FB:FBrf0192356 |
IDA: Inferred from Direct Assay |
C |
From FB |
|||
| GO:0005667 |
transcription factor complex |
FB:FBrf0155489 |
IDA: Inferred from Direct Assay |
C |
From FB |
|||
| GO:0005669 |
transcription factor TFIID complex |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
HGNC:11588 |
C |
From FB |
||
| GO:0005669 |
transcription factor TFIID complex |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
HGNC:11589 |
C |
From FB |
||
| GO:0005669 |
transcription factor TFIID complex |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
SGD:S0000950 |
C |
From FB |
||
| GO:0005669 |
transcription factor TFIID complex |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
WP:CE01408 |
C |
From FB |
||
| GO:0005669 |
transcription factor TFIID complex |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
WP:CE16453 |
C |
From FB |
||
| GO:0005700 |
polytene chromosome |
FB:FBrf0192356 |
IDA: Inferred from Direct Assay |
C |
From FB |
|||
| GO:0006357 |
regulation of transcription from RNA polymerase II promoter |
FB:FBrf0155489 |
IDA: Inferred from Direct Assay |
P |
From FB |
|||
| GO:0006357 |
regulation of transcription from RNA polymerase II promoter |
FB:FBrf0155489 |
IMP: Inferred from Mutant Phenotype |
P |
From FB |
|||
| GO:0006366 |
transcription from RNA polymerase II promoter |
FB:FBrf0155489 |
IDA: Inferred from Direct Assay |
P |
From FB |
|||
| GO:0006367 |
transcription initiation from RNA polymerase II promoter |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
HGNC:11588 |
P |
From FB |
||
| GO:0006367 |
transcription initiation from RNA polymerase II promoter |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
HGNC:11589 |
P |
From FB |
||
| GO:0006367 |
transcription initiation from RNA polymerase II promoter |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
SGD:S0000950 |
P |
From FB |
||
| GO:0006367 |
transcription initiation from RNA polymerase II promoter |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
WP:CE01408 |
P |
From FB |
||
| GO:0006367 |
transcription initiation from RNA polymerase II promoter |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
WP:CE16453 |
P |
From FB |
||
| GO:0006367 |
transcription initiation from RNA polymerase II promoter |
FB:FBrf0162294 |
TAS: Traceable Author Statement |
P |
From FB |
|||
| GO:0022008 |
neurogenesis |
FB:FBrf0214431 |
IMP: Inferred from Mutant Phenotype |
P |
From FB |
|||
| GO:0035071 |
salivary gland cell autophagic cell death |
FB:FBrf0201083 |
IMP: Inferred from Mutant Phenotype |
P |
From FB |
|||
| GO:0035075 |
response to ecdysone |
FB:FBrf0201083 |
IMP: Inferred from Mutant Phenotype |
P |
From FB |
|||
| GO:0035209 |
pupal development |
FB:FBrf0201083 |
IMP: Inferred from Mutant Phenotype |
P |
From FB |
|||
|
contributes_to |
GO:0001075 |
RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly |
FB:FBrf0155489 |
IPI: Inferred from Physical Interaction |
FB:FBgn0015664 |
F |
From FB |
|
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 Kopytova DV et al. (2006) Two isoforms of Drosophila TRF2 are involved in embryonic development, premeiotic chromatin condensation, and proper differentiation of germ cells of both sexes. Mol Cell Biol 26: 7492-505 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Hochheimer A et al. (2002) TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila. Nature 420: 439-45 PubMed GONUTS page
- ↑ 3.0 3.1 Davidson I (2003) The genetics of TBP and TBP-related factors. Trends Biochem Sci 28: 391-8 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 Aoyagi N & Wassarman DA (2000) Genes encoding Drosophila melanogaster RNA polymerase II general transcription factors: diversity in TFIIA and TFIID components contributes to gene-specific transcriptional regulation. J Cell Biol 150: F45-50 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 Bashirullah A et al. (2007) dTrf2 is required for transcriptional and developmental responses to ecdysone during Drosophila metamorphosis. Dev Dyn 236: 3173-9 PubMed GONUTS page
