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FB:Trf
Contents |
| Species (Taxon ID) | Drosophila melanogaster (fruit fly) (taxon:7227) | |
| Gene Name(s) | Trf ( synonyms: CG7562, TRF, TRF1, Trf1, X70838, dTRF-1, dTRF1, trf ) | |
| Protein Name(s) | TBP-related factor, | |
| External Links | ||
| FB | FBgn0010287 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0001092 |
TFIIA-class transcription factor binding |
FB:FBrf0098998 |
IDA: Inferred from Direct Assay |
F |
From FB |
|||
| GO:0001093 |
TFIIB-class transcription factor binding |
FB:FBrf0098998 |
IPI: Inferred from Physical Interaction |
FB:FBgn0004915 |
F |
From FB |
||
| GO:0003677 |
DNA binding |
FB:FBrf0127525 |
IDA: Inferred from Direct Assay |
F |
From FB |
|||
| GO:0003677 |
DNA binding |
FB:FBrf0162294 |
TAS: Traceable Author Statement |
F |
From FB |
|||
| GO:0005634 |
nucleus |
FB:FBrf0098998 |
IDA: Inferred from Direct Assay |
C |
From FB |
|||
| GO:0005667 |
transcription factor complex |
FB:FBrf0128662 |
IPI: Inferred from Physical Interaction |
FB:FBgn0038499 |
C |
From FB |
||
| GO:0005669 |
transcription factor TFIID complex |
FB:FBrf0059122 |
ISS: Inferred from Sequence or Structural Similarity |
C |
From FB |
|||
| GO:0005669 |
transcription factor TFIID complex |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
HGNC:11588 |
C |
From FB |
||
| GO:0005669 |
transcription factor TFIID complex |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
HGNC:11589 |
C |
From FB |
||
| GO:0005669 |
transcription factor TFIID complex |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
SGD:S0000950 |
C |
From FB |
||
| GO:0005669 |
transcription factor TFIID complex |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
WP:CE01408 |
C |
From FB |
||
| GO:0005669 |
transcription factor TFIID complex |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
WP:CE16453 |
C |
From FB |
||
| GO:0005700 |
polytene chromosome |
FB:FBrf0098998 |
IDA: Inferred from Direct Assay |
C |
From FB |
|||
| GO:0006357 |
regulation of transcription from RNA polymerase II promoter |
FB:FBrf0162294 |
TAS: Traceable Author Statement |
P |
From FB |
|||
| GO:0006359 |
regulation of transcription from RNA polymerase III promoter |
FB:FBrf0128662 |
IDA: Inferred from Direct Assay |
P |
From FB |
|||
| GO:0006359 |
regulation of transcription from RNA polymerase III promoter |
FB:FBrf0162294 |
TAS: Traceable Author Statement |
P |
From FB |
|||
| GO:0006367 |
transcription initiation from RNA polymerase II promoter |
FB:FBrf0059122 |
ISS: Inferred from Sequence or Structural Similarity |
P |
From FB |
|||
| GO:0006367 |
transcription initiation from RNA polymerase II promoter |
FB:FBrf0098998 |
IDA: Inferred from Direct Assay |
P |
From FB |
|||
| GO:0006367 |
transcription initiation from RNA polymerase II promoter |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
HGNC:11588 |
P |
From FB |
||
| GO:0006367 |
transcription initiation from RNA polymerase II promoter |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
HGNC:11589 |
P |
From FB |
||
| GO:0006367 |
transcription initiation from RNA polymerase II promoter |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
SGD:S0000950 |
P |
From FB |
||
| GO:0006367 |
transcription initiation from RNA polymerase II promoter |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
WP:CE01408 |
P |
From FB |
||
| GO:0006367 |
transcription initiation from RNA polymerase II promoter |
FB:FBrf0129705 |
ISS: Inferred from Sequence or Structural Similarity |
WP:CE16453 |
P |
From FB |
||
| GO:0006383 |
transcription from RNA polymerase III promoter |
FB:FBrf0128662 |
IDA: Inferred from Direct Assay |
P |
From FB |
|||
| GO:0006384 |
transcription initiation from RNA polymerase III promoter |
FB:FBrf0098998 |
IEP: Inferred from Expression Pattern |
P |
From FB |
|||
| GO:0008134 |
transcription factor binding |
FB:FBrf0128662 |
IPI: Inferred from Physical Interaction |
FB:FBgn0038499 |
F |
From FB |
||
| GO:0045944 |
positive regulation of transcription from RNA polymerase II promoter |
FB:FBrf0127525 |
IDA: Inferred from Direct Assay |
P |
From FB |
|||
|
NOT |
GO:0005669 |
transcription factor TFIID complex |
FB:FBrf0098998 |
IDA: Inferred from Direct Assay |
C |
From FB |
||
|
contributes_to |
GO:0001046 |
core promoter sequence-specific DNA binding |
FB:FBrf0193326 |
IPI: Inferred from Physical Interaction |
FB:FBgn0038499 |
F |
From FB |
|
|
contributes_to |
GO:0001075 |
RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly |
FB:FBrf0098998 |
IDA: Inferred from Direct Assay |
F |
From FB |
| |
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Hansen SK et al. (1997) Transcription properties of a cell type-specific TATA-binding protein, TRF. Cell 91: 71-83 PubMed GONUTS page
- ↑ 2.0 2.1 Holmes MC & Tjian R (2000) Promoter-selective properties of the TBP-related factor TRF1. Science 288: 867-70 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 Davidson I (2003) The genetics of TBP and TBP-related factors. Trends Biochem Sci 28: 391-8 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 4.3 Takada S et al. (2000) A TRF1:BRF complex directs Drosophila RNA polymerase III transcription. Cell 101: 459-69 PubMed GONUTS page
- ↑ 5.0 5.1 Crowley TE et al. (1993) A new factor related to TATA-binding protein has highly restricted expression patterns in Drosophila. Nature 361: 557-61 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 Aoyagi N & Wassarman DA (2000) Genes encoding Drosophila melanogaster RNA polymerase II general transcription factors: diversity in TFIIA and TFIID components contributes to gene-specific transcriptional regulation. J Cell Biol 150: F45-50 PubMed GONUTS page
- ↑ Isogai Y et al. (2007) Novel TRF1/BRF target genes revealed by genome-wide analysis of Drosophila Pol III transcription. EMBO J 26: 79-89 PubMed GONUTS page
