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ECOLI:RNR
Contents |
| Species (Taxon ID) | Escherichia coli (strain K12). ([1]) | |
| Gene Name(s) | rnr (synonyms: vacB, yjeC) | |
| Protein Name(s) | Ribonuclease R
RNase R Protein vacB | |
| External Links | ||
| EMBL | U14003 U00096 AP009048 J04199 | |
| PIR | S56404 | |
| RefSeq | AP_004679.1 NP_418600.4 | |
| ProteinModelPortal | P21499 | |
| SMR | P21499 | |
| DIP | DIP-10733N | |
| STRING | P21499 | |
| PRIDE | P21499 | |
| EnsemblBacteria | EBESCT00000001517 EBESCT00000016566 | |
| GeneID | 948692 | |
| GenomeReviews | AP009048_GR U00096_GR | |
| KEGG | ecj:JW5741 eco:b4179 | |
| EchoBASE | EB1239 | |
| EcoGene | EG11259 | |
| eggNOG | COG0557 | |
| GeneTree | EBGT00050000010946 | |
| HOGENOM | HBG690243 | |
| OMA | GHRDGFG | |
| ProtClustDB | PRK11642 | |
| BioCyc | EcoCyc:EG11259-MONOMER MetaCyc:EG11259-MONOMER | |
| Genevestigator | P21499 | |
| GO | GO:0004527 GO:0004540 GO:0003723 GO:0009405 GO:0016070 | |
| InterPro | IPR011129 IPR012340 IPR016027 IPR003029 IPR022967 IPR013223 IPR001900 IPR022966 IPR004476 IPR011805 IPR013668 | |
| Gene3D | G3DSA:2.40.50.140 | |
| PANTHER | PTHR23355:SF9 | |
| Pfam | PF08461 PF08206 PF00773 PF00575 | |
| SMART | SM00357 SM00955 SM00316 | |
| SUPFAM | SSF50249 | |
| TIGRFAMs | TIGR00358 TIGR02063 | |
| PROSITE | PS01175 PS50126 | |
Annotations
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0003676 |
nucleic acid binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0003723 |
RNA binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0003723 |
RNA binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0003723 |
RNA binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0003723 |
RNA binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0003723 |
RNA binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0004518 |
nuclease activity |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0004518 |
nuclease activity |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0004527 |
exonuclease activity |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0004540 |
ribonuclease activity |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0004540 |
ribonuclease activity |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0016070 |
RNA metabolic process |
IEA: Inferred from Electronic Annotation |
P |
|||||
| GO:0016787 |
hydrolase activity |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0016787 |
hydrolase activity |
PMID:9603904[1] ECOCYC:EG11259 |
IMP: Inferred from Mutant Phenotype |
F |
Table 3 illustrates the necessity of Rnr as Rnr- mutants did not grow on the plates as wild type and Rnr- mutants that still contained other functional Rnases grew. |
complete | ||
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Cheng ZF et al. (1998) The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R. J Biol Chem 273: 14077-80 PubMed GONUTS page
