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ECOLI:HFQ
Contents |
| Species (Taxon ID) | Escherichia coli (strain K12). (taxon:83333) | |
| Gene Name(s) | hfq | |
| Protein Name(s) |
| |
| External Links | ||
| UniProt Identifier | HFQ_ECOLI | |
| UniProt Accessions | P0A6X3, O24728, P25521, Q2M6D3, Q47383, | |
| EMBL | D00743, U14003, U00096, AP009048, M63655, U00005, | |
| PIR | S26832, | |
| RefSeq | AP_004672.1, NP_418593.1, | |
| PDB | 1HK9, 1M7C, 1OOU, 1OOV, 3GIB, 3QHS, | |
| Pfam | PF01423, | |
Annotations
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0003677 |
DNA binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0003681 |
bent DNA binding |
IDA: Inferred from Direct Assay |
|
F |
||||
| GO:0003723 |
RNA binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0003723 |
RNA binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0006355 |
regulation of transcription, DNA-dependent |
IEA: Inferred from Electronic Annotation |
P |
|||||
| GO:0006950 |
response to stress |
IEA: Inferred from Electronic Annotation |
P |
|||||
| GO:0040033 |
negative regulation of translation, ncRNA-mediated |
IEP: Inferred from Expression Pattern |
|
P |
||||
| GO:0061157 |
mRNA destabilization |
IDA: Inferred from Direct Assay |
P |
Fig 5.Hfq specifically binds to traJ 5' UTR. |
complete | |||
| GO:0010529 |
negative regulation of transposition |
IMP: Inferred from Mutant Phenotype |
P |
tables 1 and 2 |
complete | |||
| GO:0003677 |
DNA binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0003681 |
bent DNA binding |
IDA: Inferred from Direct Assay |
F |
|||||
| GO:0003723 |
RNA binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0003723 |
RNA binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0006355 |
regulation of transcription, DNA-dependent |
IEA: Inferred from Electronic Annotation |
P |
|||||
| GO:0006950 |
response to stress |
IEA: Inferred from Electronic Annotation |
P |
|||||
| GO:0040033 |
negative regulation of translation, ncRNA-mediated |
IEP: Inferred from Expression Pattern |
P |
| ||||
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Azam TA & Ishihama A (1999) Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity. J Biol Chem 274: 33105-13 PubMed GONUTS page
- ↑ 2.0 2.1 Pulvermacher SC et al. (2009) Role of the sRNA GcvB in regulation of cycA in Escherichia coli. Microbiology 155: 106-14 PubMed GONUTS page
- ↑ Will WR & Frost LS (2006) Hfq is a regulator of F-plasmid TraJ and TraM synthesis in Escherichia coli. J Bacteriol 188: 124-31 PubMed GONUTS page
- ↑ Ross JA et al. (2010) Tn10/IS10 transposition is downregulated at the level of transposase expression by the RNA-binding protein Hfq. Mol Microbiol 78: 607-21 PubMed GONUTS page
