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DROME:SPT6H
Contents |
| Species (Taxon ID) | Drosophila melanogaster (Fruit fly). (taxon:7227) | |
| Gene Name(s) | Spt6 | |
| Protein Name(s) |
| |
| External Links | ||
| UniProt Identifier | SPT6H_DROME | |
| UniProt Accessions | Q9W420, Q960J2, Q9U8B5, Q9U8B6, | |
| EMBL | AF104400, AF104401, AE014298, AY052030, | |
| RefSeq | NP_651962.2, | |
| Pfam | PF00575, | |
Annotations
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0035101 |
FACT complex |
IPI: Inferred from Physical Interaction |
C |
|||||
| GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
IEA: Inferred from Electronic Annotation |
P |
|||||
| GO:0005703 |
polytene chromosome puff |
IDA: Inferred from Direct Assay |
|
C |
||||
| GO:0003723 |
RNA binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0005703 |
polytene chromosome puff |
IDA: Inferred from Direct Assay |
|
C |
||||
| GO:0003711 |
transcription elongation regulator activity |
NAS: Non-traceable Author Statement |
|
F |
||||
| GO:0008023 |
transcription elongation factor complex |
IPI: Inferred from Physical Interaction |
C |
|||||
| GO:0005700 |
polytene chromosome |
IDA: Inferred from Direct Assay |
|
C |
||||
| GO:0005634 |
nucleus |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-0191 |
C |
||||
| GO:0002805 |
regulation of antimicrobial peptide biosynthetic process |
IMP: Inferred from Mutant Phenotype |
|
P |
||||
| GO:0005705 |
polytene chromosome interband |
IDA: Inferred from Direct Assay |
|
C |
||||
| GO:0016788 |
hydrolase activity, acting on ester bonds |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0003711 |
transcription elongation regulator activity |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0000176 |
nuclear exosome (RNase complex) |
IPI: Inferred from Physical Interaction |
|
C |
||||
| GO:0032784 |
regulation of transcription elongation, DNA-dependent |
IEA: Inferred from Electronic Annotation |
P |
|||||
| GO:0006366 |
transcription from RNA polymerase II promoter |
IEP: Inferred from Expression Pattern |
|
P |
||||
| GO:0032784 |
regulation of transcription elongation, DNA-dependent |
NAS: Non-traceable Author Statement |
|
P |
||||
| GO:0006354 |
transcription elongation, DNA-dependent |
NAS: Non-traceable Author Statement |
|
P |
||||
| GO:0006357 |
regulation of transcription from RNA polymerase II promoter |
IEA: Inferred from Electronic Annotation |
P |
|||||
| GO:0005703 |
polytene chromosome puff |
IDA: Inferred from Direct Assay |
|
C |
||||
| GO:0005634 |
nucleus |
IEA: Inferred from Electronic Annotation |
C |
|||||
| GO:0002805 |
regulation of antimicrobial peptide biosynthetic process |
IMP: Inferred from Mutant Phenotype |
P |
|||||
| GO:0003723 |
RNA binding |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0005634 |
nucleus |
IEA: Inferred from Electronic Annotation |
C |
|||||
| GO:0005634 |
nucleus |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-0191 |
C |
||||
| GO:0005703 |
polytene chromosome puff |
IDA: Inferred from Direct Assay |
C |
|||||
| GO:0005703 |
polytene chromosome puff |
IDA: Inferred from Direct Assay |
C |
|||||
| GO:0005703 |
polytene chromosome puff |
IDA: Inferred from Direct Assay |
C |
|||||
| GO:0005705 |
polytene chromosome interband |
IDA: Inferred from Direct Assay |
C |
|||||
| GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
IEA: Inferred from Electronic Annotation |
P |
|||||
| GO:0006351 |
transcription, DNA-dependent |
IEA: Inferred from Electronic Annotation |
P |
|||||
| GO:0006355 |
regulation of transcription, DNA-dependent |
IEA: Inferred from Electronic Annotation |
P |
|||||
| GO:0006357 |
regulation of transcription from RNA polymerase II promoter |
IEA: Inferred from Electronic Annotation |
P |
|||||
| GO:0006366 |
transcription from RNA polymerase II promoter |
IEP: Inferred from Expression Pattern |
P |
|||||
| GO:0008023 |
transcription elongation factor complex |
IPI: Inferred from Physical Interaction |
C |
|||||
| GO:0016788 |
hydrolase activity, acting on ester bonds |
IEA: Inferred from Electronic Annotation |
F |
|||||
| GO:0032784 |
regulation of transcription elongation, DNA-dependent |
IEA: Inferred from Electronic Annotation |
P |
|||||
| GO:0035327 |
transcriptionally active chromatin |
IDA: Inferred from Direct Assay |
C |
|||||
| GO:0035363 |
histone locus body |
IDA: Inferred from Direct Assay |
C |
|||||
|
colocalizes_with |
GO:0000176 |
nuclear exosome (RNase complex) |
IDA: Inferred from Direct Assay |
C |
||||
|
colocalizes_with |
GO:0035101 |
FACT complex |
IPI: Inferred from Physical Interaction |
C |
| |||
| edit table |
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Saunders A et al. (2003) Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo. Science 301: 1094-6 PubMed GONUTS page
- ↑ 2.0 2.1 Andrulis ED et al. (2000) High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation. Genes Dev 14: 2635-49 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 Kaplan CD et al. (2000) Spt5 and spt6 are associated with active transcription and have characteristics of general elongation factors in D. melanogaster. Genes Dev 14: 2623-34 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 Andrulis ED et al. (2002) The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila. Nature 420: 837-41 PubMed GONUTS page
- ↑ 5.0 5.1 Valanne S et al. (2010) Genome-wide RNA interference in Drosophila cells identifies G protein-coupled receptor kinase 2 as a conserved regulator of NF-kappaB signaling. J Immunol 184: 6188-98 PubMed GONUTS page
- ↑ White AE et al. (2011) Drosophila histone locus bodies form by hierarchical recruitment of components. J Cell Biol 193: 677-94 PubMed GONUTS page
