Category:GO:0000976 ! transcription regulatory region sequence-specific DNA binding

name: transcription regulatory region sequence-specific DNA binding
namespace: molecular_function
def: "Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon." [GOC:txnOH]
comment: The word "promoter" is used variously in the literature to describe the core promoter specifically or the entire proximal regulatory region (excluding any distal enhancers) including both the core promoter and the upstream region where activating transcription factors such as Gal4 in S. cerevisiae or catabolite activator protein (CAP) in E. coli bind. To minimize ambiguity in the use of the word "promoter" in GO, we have chosen the phrase "transcription regulatory region" in order to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the "core promoter" where the basal transcription machinery binds, the "core promoter proximal region" where regulatory factors other than the basal machinery bind, and "enhancer" regions which are typically more distal from the core promoter. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription. ANNOTATION NOTE: Regarding annotation to "transcription regulatory region DNA binding" (GO:0044212) and any of its is_a children, note that annotation to these terms specifies DNA binding only without any statement about transcription factor activity. To make an annotation about a function of transcription factor activity, consider "sequence-specific DNA binding transcription factor activity" (GO:0003700) or its is_a children which have has_part relationships to the appropriate kind of "transcription regulatory region DNA binding".
is_a: GO:0043565 ! sequence-specific DNA binding
is_a: GO:0044212 ! transcription regulatory region DNA binding

AmiGO

Child Terms

This term has the following 9 child terms, out of 9 total.

• [+] GO:0000977 ! RNA polymerase II regulatory region sequence-specific DNA binding (6)
• [+] GO:0000984 ! bacterial-type RNA polymerase regulatory region sequence-specific DNA binding (5)
• [+] GO:0000987 ! core promoter proximal region sequence-specific DNA binding (4)
• [+] GO:0000987 ! regulatory transcription factor site sequence-specific DNA binding (3)
• [+] GO:0000992 ! polymerase III regulatory region sequence-specific DNA binding (4)
• [+] GO:0001044 ! mitochondrial RNA polymerase regulatory region sequence-specific DNA binding (4)
• [+] GO:0001046 ! core promoter sequence-specific DNA binding (5)
• [+] GO:0001147 ! transcription termination site sequence-specific DNA binding (2)
• [+] GO:0001158 ! enhancer sequence-specific DNA binding (4)

Pages in category "GO:0000976 ! transcription regulatory region sequence-specific DNA binding"

The following 136 pages are in this category, out of 136 total.