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Category:CACAO Spring 2014

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CACAO
the intercollegiate annotation competition!
The Community Assessment of Community Annotation with Ontologies (CACAO) is a competition for teams of undergrads around the world to improve the functional annotation of genes. CACAO was developed and is currently run at Texas A&M University, along with many other institutions. If you are interested in participating, please email us - EcoliWiki team or Jim or Suzi.
TAMU.jpg

CACAO Spring 2014

  • Don't forget - no binding terms (i.e. DNA binding, etc) & no response to terms (i.e. response to heat, etc)
  • For more help on evidence codes

Participating schools

  • Centenary College
  • Michigan State University
  • Minnesota State University - Morehead
  • North Dakota State University
  • Texas A&M University

Lecture slides

Past background info is at the About CACAO page. Links to new material will be posted here.

Evidence codes you are permitted to choose from

  • Here's a list of the evidence codes that CACAO students may use:
  1. IDA: Inferred from Direct Assay
  2. IMP: Inferred from Mutant Phenotype
  3. IGI: Inferred from Genetic Interaction - requires with/from field to be filled in
  4. ISO: Inferred from Sequence Orthology - requires with/from field to be filled in
  5. ISA: Inferred from Sequence Alignment - requires with/from field to be filled in
  6. ISM: Inferred from Sequence Model - requires with/from field to be filled in
  7. IGC: Inferred from Genomic Context

ALL other codes, even if used correctly, will cause the annotation to be rejected by the judges

Virus-related GO terms

  • For those of you interested in annotating proteins from viruses and phages:

Scoreboard

Calendar of Rounds

Inning Activity Start End Notes

1

annotation

  • 2014-01-26
  • 06:00 PM
  • 2014-02-02
  • 05:59 PM

1

challenge

  • 2014-02-02
  • 06:00 PM
  • 2014-02-09
  • 05:59 PM

2

annotation

  • 2014-02-09
  • 06:00 PM
  • 2014-02-16
  • 05:59 PM

2

challenge

  • 2014-02-16
  • 06:00 PM
  • 2014-02-23
  • 05:59 PM

3

annotation

  • 2014-02-23
  • 06:00 PM
  • 2014-03-02
  • 05:59 PM

3

challenge

  • 2014-03-02
  • 06:00 PM
  • 2014-03-16
  • 05:59 PM

longer for Spring Break at TAMU

4

annotation

  • 2014-03-16
  • 06:00 PM
  • 2014-03-23
  • 05:59 PM

4

challenge

  • 2014-03-23
  • 06:00 PM
  • 2014-03-30
  • 05:59 PM

5

annotation

  • 2014-03-30
  • 06:00 PM
  • 2014-04-06
  • 05:59 PM

5

challenge

  • 2014-04-06
  • 06:00 PM
  • 2014-04-13
  • 05:59 PM


Subcategories

This category has the following 90 subcategories, out of 90 total.

Pages in category "CACAO Spring 2014"

The following 5 pages are in this category, out of 5 total.


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