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Category:CACAO Fall 2013

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CACAO
the intercollegiate annotation competition!
The Community Assessment of Community Annotation with Ontologies (CACAO) is a competition for teams of undergrads around the world to improve the functional annotation of genes. CACAO was developed and is currently run at Texas A&M University, along with many other institutions. If you are interested in participating, please email us - Brenley or Jim.
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CACAO Fall 2013

  • Don't forget - no binding terms (i.e. DNA binding, etc) & no response to terms (i.e. response to heat, etc)
  • For more help on evidence codes

Lecture slides

Evidence codes you are permitted to choose from

  • Here's a list of the evidence codes that CACAO students may use:
  1. IDA: Inferred from Direct Assay
  2. IMP: Inferred from Mutant Phenotype
  3. IGI: Inferred from Genetic Interaction - requires with/from field to be filled in
  4. ISO: Inferred from Sequence Orthology - requires with/from field to be filled in
  5. ISA: Inferred from Sequence Alignment - requires with/from field to be filled in
  6. ISM: Inferred from Sequence Model - requires with/from field to be filled in
  7. IGC: Inferred from Genomic Context

Virus-related GO terms

  • For those of you interested in annotating proteins from viruses and phages:

Scoreboard

Calendar of Rounds

Inning/Round Period Start - End Dates (CST) Schools Notes

0

Practice

Aug 27, 6:00pm - Sept 8, 5:59pm

1

Annotation

Sept 8, 6:00pm – Sept 15, 5:59pm

Texas A&M

University of Wisconsin-Madison

1

Challenge

Sept 15, 6:00pm – Sept 22, 5:59pm

2

Annotation

Sept 22, 6:00pm – Sept 29, 5:59pm

2

Challenge

Sept 29, 6:00pm – Oct 6, 5:59pm

3

Annotation

Oct 6, 6:00pm – Oct 13, 5:59pm

3

Challenge

Oct 13, 6:00pm – Oct 20, 5:59pm

4

Annotation

Oct 20, 6:00pm – Oct 27, 5:59pm

4

Challenge

Oct 27, 6:00pm – Nov 3, 5:59pm

5

Annotation

Nov 3, 6:00pm - Nov 10, 5:59pm

5

Challenge

Nov 10, 6:00pm - Nov 17, 5:59pm


Participating Schools

Subcategories

This category has the following 24 subcategories, out of 24 total.

Pages in category "CACAO Fall 2013"

The following 6 pages are in this category, out of 6 total.


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