GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

BACSU:YJBM

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Bacillus subtilis (strain 168). (224308)
Gene Name(s) yjbM
Protein Name(s) GTP pyrophosphokinase YjbM

(p)ppGpp synthase YjbM Small alarmone synthase 1 SAS 1

External Links
UniProt O31611
EMBL AL009126
PIR E69844
RefSeq NP_389042.1
ProteinModelPortal O31611
SMR O31611
STRING 224308.BSU11600
PaxDb O31611
EnsemblBacteria CAB13017
GeneID 939809
KEGG bsu:BSU11600
PATRIC 18974037
GenoList BSU11600
eggNOG COG2357
HOGENOM HOG000263233
InParanoid O31611
KO K07816
OMA HEEMYDI
OrthoDB EOG6P5ZJ6
PhylomeDB O31611
BioCyc BSUB:BSU11600-MONOMER
UniPathway UPA00908
Proteomes UP000001570
GO GO:0005524
GO:0005525
GO:0008728
GO:0016301
GO:0015970
InterPro IPR007685
Pfam PF04607
SMART SM00954

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0008728

GTP diphosphokinase activity

PMID:18067544[1]

ECO:0000314

F

Figure 3C: Shows in vitro YjbM activity with use of radiolabeled ATP. Figure shows pppGpp synthesis in presence of YjbM.

complete

enables

GO:0008728

GTP diphosphokinase activity

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001847339
UniProtKB:O31611
UniProtKB:P39583

F

Seeded From UniProt

complete

involved_in

GO:0015969

guanosine tetraphosphate metabolic process

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR007685

P

Seeded From UniProt

complete

enables

GO:0008728

GTP diphosphokinase activity

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:2.7.6.5

F

Seeded From UniProt

complete

enables

GO:0016740

transferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0808

F

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

involved_in

GO:0016310

phosphorylation

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0418

P

Seeded From UniProt

complete

enables

GO:0000166

nucleotide binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0547

F

Seeded From UniProt

complete

enables

GO:0016301

kinase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0418

F

Seeded From UniProt

complete

enables

GO:0005525

GTP binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0342

F

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0067

F

Seeded From UniProt

complete

involved_in

GO:0015970

guanosine tetraphosphate biosynthetic process

GO_REF:0000041

ECO:0000322

imported manually asserted information used in automatic assertion

UniPathway:UPA00908

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Nanamiya, H et al. (2008) Identification and functional analysis of novel (p)ppGpp synthetase genes in Bacillus subtilis. Mol. Microbiol. 67 291-304 PubMed GONUTS page
  2. Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page