ARATH:RAP1

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Species (Taxon ID)	Arabidopsis thaliana (Mouse-ear cress). (taxon:3702)
Gene Name(s)	RAP1 ( synonyms: BHLH6, EN38, JAI1, JIN1, MYC2, RD22BP1, ZBF1 )
Protein Name(s)	Transcription factor MYC2 AtMYC2 Basic helix-loop-helix protein 6 AtbHLH6 bHLH 6 Protein JASMONATE INSENSITIVE 1 R-homologous Arabidopsis protein 1 RAP-1 Transcription factor EN 38 Z-box binding factor 1 protein bHLH transcription factor bHLH006 rd22BP1
External Links
UniProt Identifier	RAP1_ARATH
UniProt Accessions	Q39204, O48644, Q5K1L7, Q8W2F4, Q9LPJ8,
EMBL	X99548, AB000875, AJ843256, AC017118, CP002684, AY037203, BT003042, AF251691,
PIR	T52293,
RefSeq	NP_174541.1,
IntAct	Q39204,
Pfam	PF00010,

Annotations

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect
	GO:0003677	DNA binding	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0238	F
	GO:0003677	DNA binding	PMID:9368419^[1]	IDA: Inferred from Direct Assay		F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q58G47	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q8LBM2	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q8W4J8	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q93ZM9	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9C5K8	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9C9E3	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9LDU5	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9LMA8	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9LVI4	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9M246	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9S7M2	F
	GO:0005634	nucleus	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011598	C
	GO:0005634	nucleus	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0539	C
	GO:0005634	nucleus	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0191	C
	GO:0005634	nucleus	PMID:21242320^[3]	IDA: Inferred from Direct Assay		C
	GO:0006351	transcription, DNA-dependent	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0804	P
	GO:0006355	regulation of transcription, DNA-dependent	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0805	P
	GO:0009269	response to desiccation	PMID:9368419^[1]	IEP: Inferred from Expression Pattern		P
	GO:0009611	response to wounding	PMID:17675405^[4]	IEP: Inferred from Expression Pattern		P
	GO:0009611	response to wounding	PMID:9680973^[5]	TAS: Traceable Author Statement		P
	GO:0009737	response to abscisic acid stimulus	PMID:9368419^[1]	IEP: Inferred from Expression Pattern		P
	GO:0009738	abscisic acid mediated signaling pathway	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0938	P
	GO:0009753	response to jasmonic acid stimulus	PMID:21242320^[3]	IMP: Inferred from Mutant Phenotype		P
	GO:0009963	positive regulation of flavonoid biosynthetic process	PMID:17616737^[6]	IEP: Inferred from Expression Pattern		P
	GO:0010200	response to chitin	PMID:17722694^[7]	IEP: Inferred from Expression Pattern		P
	GO:0016563	transcription activator activity	PMID:21321051^[8]	IDA: Inferred from Direct Assay		F
	GO:0016563	transcription activator activity	PMID:9368419^[1]	IDA: Inferred from Direct Assay		F
	GO:0030528	transcription regulator activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001092	F
	GO:0030528	transcription regulator activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011598	F
	GO:0043619	regulation of transcription from RNA polymerase II promoter in response to oxidative stress	PMID:17616737^[6]	IMP: Inferred from Mutant Phenotype		P
	GO:0045893	positive regulation of transcription, DNA-dependent	PMID:9368419^[1]	IDA: Inferred from Direct Assay		P
	GO:0051090	regulation of sequence-specific DNA binding transcription factor activity	PMID:17616737^[6]	IMP: Inferred from Mutant Phenotype		P
	GO:2000068	regulation of defense response to insect	PMID:17616737^[6]	IMP: Inferred from Mutant Phenotype		P
	GO:0003677	DNA binding	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0238	F
	GO:0003677	DNA binding	PMID:9368419^[1]	IDA: Inferred from Direct Assay		F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q58G47	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q58G47	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q8LBM2	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q8LBM2	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q8W4J8	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q8W4J8	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q93ZM9	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q93ZM9	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9C5K8	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9C5K8	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9C9E3	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9C9E3	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9LDU5	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9LDU5	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9LMA8	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9LMA8	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9LVI4	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9LVI4	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9M246	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9M246	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9S7M2	F
	GO:0005515	protein binding	PMID:19309455^[2]	IPI: Inferred from Physical Interaction	UniProtKB:Q9S7M2	F
	GO:0005634	nucleus	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011598	C
	GO:0005634	nucleus	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0539	C
	GO:0005634	nucleus	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0191	C
	GO:0005634	nucleus	PMID:21242320^[3]	IDA: Inferred from Direct Assay		C
	GO:0006351	transcription, DNA-dependent	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0804	P
	GO:0006355	regulation of transcription, DNA-dependent	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001092	P
	GO:0006355	regulation of transcription, DNA-dependent	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011598	P
	GO:0006355	regulation of transcription, DNA-dependent	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0805	P
	GO:0009269	response to desiccation	PMID:9368419^[1]	IEP: Inferred from Expression Pattern		P
	GO:0009611	response to wounding	PMID:17675405^[4]	IEP: Inferred from Expression Pattern		P
	GO:0009611	response to wounding	PMID:9680973^[5]	TAS: Traceable Author Statement		P
	GO:0009737	response to abscisic acid stimulus	PMID:9368419^[1]	IEP: Inferred from Expression Pattern		P
	GO:0009738	abscisic acid mediated signaling pathway	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0938	P
	GO:0009753	response to jasmonic acid stimulus	PMID:21242320^[3]	IMP: Inferred from Mutant Phenotype		P
	GO:0009963	positive regulation of flavonoid biosynthetic process	PMID:17616737^[6]	IEP: Inferred from Expression Pattern		P
	GO:0010200	response to chitin	PMID:17722694^[7]	IEP: Inferred from Expression Pattern		P
	GO:0043619	regulation of transcription from RNA polymerase II promoter in response to oxidative stress	PMID:17616737^[6]	IMP: Inferred from Mutant Phenotype		P
	GO:0045893	positive regulation of transcription, DNA-dependent	PMID:21321051^[8]	IDA: Inferred from Direct Assay		P
	GO:0045893	positive regulation of transcription, DNA-dependent	PMID:9368419^[1]	IDA: Inferred from Direct Assay		P
	GO:0051090	regulation of sequence-specific DNA binding transcription factor activity	PMID:17616737^[6]	IMP: Inferred from Mutant Phenotype		P
	GO:2000068	regulation of defense response to insect	PMID:17616737^[6]	IMP: Inferred from Mutant Phenotype		P
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 Abe H et al. (1997) Role of arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Plant Cell 9: 1859-68 PubMed GONUTS page
↑ ^2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 ^2.11 ^2.12 ^2.13 ^2.14 ^2.15 ^2.16 ^2.17 ^2.18 ^2.19 ^2.20 ^2.21 ^2.22 ^2.23 ^2.24 ^2.25 ^2.26 ^2.27 ^2.28 ^2.29 ^2.30 ^2.31 ^2.32 Chini A et al. (2009) The ZIM domain mediates homo- and heteromeric interactions between Arabidopsis JAZ proteins. Plant J 59: 77-87 PubMed GONUTS page
↑ ^3.0 ^3.1 ^3.2 ^3.3 Cheng Z et al. (2011) The bHLH transcription factor MYC3 interacts with the Jasmonate ZIM-domain proteins to mediate jasmonate response in Arabidopsis. Mol Plant 4: 279-88 PubMed GONUTS page
↑ ^4.0 ^4.1 Yan Y et al. (2007) A downstream mediator in the growth repression limb of the jasmonate pathway. Plant Cell 19: 2470-83 PubMed GONUTS page
↑ ^5.0 ^5.1 Rojo E et al. (1998) Reversible protein phosphorylation regulates jasmonic acid-dependent and -independent wound signal transduction pathways in Arabidopsis thaliana. Plant J 13: 153-65 PubMed GONUTS page
↑ ^6.0 ^6.1 ^6.2 ^6.3 ^6.4 ^6.5 ^6.6 ^6.7 Dombrecht B et al. (2007) MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis. Plant Cell 19: 2225-45 PubMed GONUTS page
↑ ^7.0 ^7.1 Libault M et al. (2007) Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Mol Plant Microbe Interact 20: 900-11 PubMed GONUTS page
↑ ^8.0 ^8.1 Niu Y et al. (2011) Characterization of JAZ-interacting bHLH transcription factors that regulate jasmonate responses in Arabidopsis. J Exp Bot 62: 2143-54 PubMed GONUTS page

[PMID:9368419-0] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 Abe H et al. (1997) Role of arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Plant Cell 9: 1859-68 PubMed GONUTS page

[PMID:19309455-1] 2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 ^2.11 ^2.12 ^2.13 ^2.14 ^2.15 ^2.16 ^2.17 ^2.18 ^2.19 ^2.20 ^2.21 ^2.22 ^2.23 ^2.24 ^2.25 ^2.26 ^2.27 ^2.28 ^2.29 ^2.30 ^2.31 ^2.32 Chini A et al. (2009) The ZIM domain mediates homo- and heteromeric interactions between Arabidopsis JAZ proteins. Plant J 59: 77-87 PubMed GONUTS page

[PMID:21242320-2] 3.0 ^3.1 ^3.2 ^3.3 Cheng Z et al. (2011) The bHLH transcription factor MYC3 interacts with the Jasmonate ZIM-domain proteins to mediate jasmonate response in Arabidopsis. Mol Plant 4: 279-88 PubMed GONUTS page

[PMID:17675405-3] 4.0 ^4.1 Yan Y et al. (2007) A downstream mediator in the growth repression limb of the jasmonate pathway. Plant Cell 19: 2470-83 PubMed GONUTS page

[PMID:9680973-4] 5.0 ^5.1 Rojo E et al. (1998) Reversible protein phosphorylation regulates jasmonic acid-dependent and -independent wound signal transduction pathways in Arabidopsis thaliana. Plant J 13: 153-65 PubMed GONUTS page

[PMID:17616737-5] 6.0 ^6.1 ^6.2 ^6.3 ^6.4 ^6.5 ^6.6 ^6.7 Dombrecht B et al. (2007) MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis. Plant Cell 19: 2225-45 PubMed GONUTS page

[PMID:17722694-6] 7.0 ^7.1 Libault M et al. (2007) Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Mol Plant Microbe Interact 20: 900-11 PubMed GONUTS page

[PMID:21321051-7] 8.0 ^8.1 Niu Y et al. (2011) Characterization of JAZ-interacting bHLH transcription factors that regulate jasmonate responses in Arabidopsis. J Exp Bot 62: 2143-54 PubMed GONUTS page

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ARATH:RAP1

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