ARATH:LHP1

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Species (Taxon ID)	Arabidopsis thaliana (Mouse-ear cress). (taxon:3702)
Gene Name(s)	LHP1 ( synonyms: TFL2, TU8 )
Protein Name(s)	Chromo domain-containing protein LHP1 Protein LIKE HETEROCHROMATIN PROTEIN 1 Protein TERMINAL FLOWER 2
External Links
UniProt Identifier	LHP1_ARATH
UniProt Accessions	Q946J8, Q9FN82,
EMBL	AF387639, AB073490, AB006706, CP002688,
RefSeq	NP_197271.1,
IntAct	Q946J8,
Pfam	PF00385,

Annotations

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0016568	chromatin modification	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0156	P
	GO:0010016	shoot morphogenesis	PMID:9611176^[1]	IMP: Inferred from Mutant Phenotype		P
	GO:0009908	flower development	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0287	P
	GO:0005634	nucleus	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000953	C
	GO:0010048	vernalization response	PMID:16682972^[2]	IMP: Inferred from Mutant Phenotype		P
	GO:0045814	negative regulation of gene expression, epigenetic	PMID:16549797^[3]	IMP: Inferred from Mutant Phenotype		P
	GO:0006333	chromatin assembly or disassembly	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000953	P
	GO:0005634	nucleus	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0191	C
	GO:0007275	multicellular organismal development	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0217	P
	GO:0045449	regulation of transcription	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0805	P
	GO:0006350	transcription	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0804	P
	GO:0006325	chromatin organization	PMID:16244868^[4]	IMP: Inferred from Mutant Phenotype		P
	GO:0006342	chromatin silencing	PMID:17542647^[5]	IEP: Inferred from Expression Pattern		P
	GO:0035064	methylated histone residue binding	PMID:17542647^[5]	IDA: Inferred from Direct Assay		F
	GO:0009825	multidimensional cell growth	PMID:9611176^[1]	IMP: Inferred from Mutant Phenotype		P
	GO:0000785	chromatin	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000953	C
	GO:0045857	negative regulation of molecular function, epigenetic	PMID:20671111^[6]	IMP: Inferred from Mutant Phenotype		P
	GO:0030154	cell differentiation	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0221	P
	GO:0003682	chromatin binding	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000953	F
	GO:0000791	euchromatin	PMID:16244868^[4]	IDA: Inferred from Direct Assay		C
	GO:0003677	DNA binding	PMID:16972870^[7]	IDA: Inferred from Direct Assay		F
	GO:0048573	photoperiodism, flowering	PMID:18799658^[8]	IMP: Inferred from Mutant Phenotype		P
	GO:0009648	photoperiodism	PMID:9611176^[1]	IMP: Inferred from Mutant Phenotype		P
	GO:0006342	chromatin silencing	PMID:16549797^[3]	IMP: Inferred from Mutant Phenotype		P
	GO:0035064	methylated histone residue binding	PMID:17676062^[9]	IDA: Inferred from Direct Assay		F
	GO:0009910	negative regulation of flower development	PMID:9611176^[1]	IMP: Inferred from Mutant Phenotype		P
	GO:0048364	root development	PMID:9611176^[1]	IMP: Inferred from Mutant Phenotype		P
	GO:0005634	nucleus	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0539	C
	GO:0005720	nuclear heterochromatin	PMID:16361394^[10]	IDA: Inferred from Direct Assay		C
	GO:0009851	auxin biosynthetic process	PMID:21251106^[11]	IMP: Inferred from Mutant Phenotype		P	Figure 2b, Figure 3b	complete
	GO:0045449	regulation of transcription	PMID:21304947^[12]	IMP: Inferred from Mutant Phenotype		P	See Fig. 6A.	complete
	GO:0048366	leaf development	PMID:11731464^[13]	IMP: Inferred from Mutant Phenotype		P	See Fig. 1.	complete
	GO:0010080	regulation of floral meristem growth	PMID:11731464^[13]	IMP: Inferred from Mutant Phenotype		P	See Table 1.	complete
	GO:0048437	floral organ development	PMID:11731464^[13]	IMP: Inferred from Mutant Phenotype		P	See Fig. 1.	complete
	GO:0045449	regulation of transcription	PMID:11731464^[13]	IMP: Inferred from Mutant Phenotype		P	See Fig. 6A.	complete
	GO:0000791	euchromatin	PMID:16244868^[4]	IDA: Inferred from Direct Assay		C
	GO:0003677	DNA binding	PMID:16972870^[7]	IDA: Inferred from Direct Assay		F
	GO:0005634	nucleus	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000953	C
	GO:0005634	nucleus	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0539	C
	GO:0005634	nucleus	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0191	C
	GO:0005720	nuclear heterochromatin	PMID:16361394^[10]	IDA: Inferred from Direct Assay		C
	GO:0006325	chromatin organization	PMID:16244868^[4]	IMP: Inferred from Mutant Phenotype		P
	GO:0006342	chromatin silencing	PMID:16549797^[3]	IMP: Inferred from Mutant Phenotype		P
	GO:0006342	chromatin silencing	PMID:17542647^[5]	IEP: Inferred from Expression Pattern		P
	GO:0006351	transcription, DNA-dependent	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0804	P
	GO:0006355	regulation of transcription, DNA-dependent	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0805	P
	GO:0007275	multicellular organismal development	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0217	P
	GO:0009648	photoperiodism	PMID:9611176^[1]	IMP: Inferred from Mutant Phenotype		P
	GO:0009825	multidimensional cell growth	PMID:9611176^[1]	IMP: Inferred from Mutant Phenotype		P
	GO:0009908	flower development	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0287	P
	GO:0009910	negative regulation of flower development	PMID:9611176^[1]	IMP: Inferred from Mutant Phenotype		P
	GO:0010016	shoot morphogenesis	PMID:9611176^[1]	IMP: Inferred from Mutant Phenotype		P
	GO:0010048	vernalization response	PMID:16682972^[2]	IMP: Inferred from Mutant Phenotype		P
	GO:0016568	chromatin modification	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0156	P
	GO:0030154	cell differentiation	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0221	P
	GO:0035064	methylated histone residue binding	PMID:17542647^[5]	IDA: Inferred from Direct Assay		F
	GO:0035064	methylated histone residue binding	PMID:17676062^[9]	IDA: Inferred from Direct Assay		F
	GO:0045814	negative regulation of gene expression, epigenetic	PMID:16549797^[3]	IMP: Inferred from Mutant Phenotype		P
	GO:0045857	negative regulation of molecular function, epigenetic	PMID:20671111^[6]	IMP: Inferred from Mutant Phenotype		P
	GO:0048573	photoperiodism, flowering	PMID:18799658^[8]	IMP: Inferred from Mutant Phenotype		P
NOT	GO:0048364	root development	PMID:9611176^[1]	IMP: Inferred from Mutant Phenotype		P
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 ^1.9 Larsson AS et al. (1998) The TERMINAL FLOWER2 (TFL2) gene controls the reproductive transition and meristem identity in Arabidopsis thaliana. Genetics 149: 597-605 PubMed GONUTS page
↑ ^2.0 ^2.1 Sung S et al. (2006) Epigenetic maintenance of the vernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN 1. Nat Genet 38: 706-10 PubMed GONUTS page
↑ ^3.0 ^3.1 ^3.2 ^3.3 Mylne JS et al. (2006) LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. Proc Natl Acad Sci U S A 103: 5012-7 PubMed GONUTS page
↑ ^4.0 ^4.1 ^4.2 ^4.3 Libault M et al. (2005) The Arabidopsis LHP1 protein is a component of euchromatin. Planta 222: 910-25 PubMed GONUTS page
↑ ^5.0 ^5.1 ^5.2 ^5.3 Turck F et al. (2007) Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27. PLoS Genet 3: e86 PubMed GONUTS page
↑ ^6.0 ^6.1 Kim DH et al. (2010) Vernalization-mediated VIN3 Induction Overcomes the LIKE-HETEROCHROMATIN PROTEIN1/POLYCOMB REPRESSION COMPLEX2-mediated epigenetic repression. Plant Physiol 154: 949-57 PubMed GONUTS page
↑ ^7.0 ^7.1 Germann S et al. (2006) DamID, a new tool for studying plant chromatin profiling in vivo, and its use to identify putative LHP1 target loci. Plant J 48: 153-63 PubMed GONUTS page
↑ ^8.0 ^8.1 Pouteau S et al. (2008) Diversification of photoperiodic response patterns in a collection of early-flowering mutants of Arabidopsis. Plant Physiol 148: 1465-73 PubMed GONUTS page
↑ ^9.0 ^9.1 Zhang X et al. (2007) The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation. Nat Struct Mol Biol 14: 869-71 PubMed GONUTS page
↑ ^10.0 ^10.1 Zemach A et al. (2006) Different domains control the localization and mobility of LIKE HETEROCHROMATIN PROTEIN1 in Arabidopsis nuclei. Plant Cell 18: 133-45 PubMed GONUTS page
↑ Rizzardi K et al. (2011) TFL2/LHP1 is involved in auxin biosynthesis through positive regulation of YUCCA genes. Plant J 65: 897-906 PubMed GONUTS page
↑ Latrasse D et al. (2011) Control of flowering and cell fate by LIF2, an RNA binding partner of the polycomb complex component LHP1. PLoS One 6: e16592 PubMed GONUTS page
↑ ^13.0 ^13.1 ^13.2 ^13.3 Gaudin V et al. (2001) Mutations in LIKE HETEROCHROMATIN PROTEIN 1 affect flowering time and plant architecture in Arabidopsis. Development 128: 4847-58 PubMed GONUTS page

[PMID:9611176-0] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 ^1.9 Larsson AS et al. (1998) The TERMINAL FLOWER2 (TFL2) gene controls the reproductive transition and meristem identity in Arabidopsis thaliana. Genetics 149: 597-605 PubMed GONUTS page

[PMID:16682972-1] 2.0 ^2.1 Sung S et al. (2006) Epigenetic maintenance of the vernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN 1. Nat Genet 38: 706-10 PubMed GONUTS page

[PMID:16549797-2] 3.0 ^3.1 ^3.2 ^3.3 Mylne JS et al. (2006) LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. Proc Natl Acad Sci U S A 103: 5012-7 PubMed GONUTS page

[PMID:16244868-3] 4.0 ^4.1 ^4.2 ^4.3 Libault M et al. (2005) The Arabidopsis LHP1 protein is a component of euchromatin. Planta 222: 910-25 PubMed GONUTS page

[PMID:17542647-4] 5.0 ^5.1 ^5.2 ^5.3 Turck F et al. (2007) Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27. PLoS Genet 3: e86 PubMed GONUTS page

[PMID:20671111-5] 6.0 ^6.1 Kim DH et al. (2010) Vernalization-mediated VIN3 Induction Overcomes the LIKE-HETEROCHROMATIN PROTEIN1/POLYCOMB REPRESSION COMPLEX2-mediated epigenetic repression. Plant Physiol 154: 949-57 PubMed GONUTS page

[PMID:16972870-6] 7.0 ^7.1 Germann S et al. (2006) DamID, a new tool for studying plant chromatin profiling in vivo, and its use to identify putative LHP1 target loci. Plant J 48: 153-63 PubMed GONUTS page

[PMID:18799658-7] 8.0 ^8.1 Pouteau S et al. (2008) Diversification of photoperiodic response patterns in a collection of early-flowering mutants of Arabidopsis. Plant Physiol 148: 1465-73 PubMed GONUTS page

[PMID:17676062-8] 9.0 ^9.1 Zhang X et al. (2007) The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation. Nat Struct Mol Biol 14: 869-71 PubMed GONUTS page

[PMID:16361394-9] 10.0 ^10.1 Zemach A et al. (2006) Different domains control the localization and mobility of LIKE HETEROCHROMATIN PROTEIN1 in Arabidopsis nuclei. Plant Cell 18: 133-45 PubMed GONUTS page

[PMID:21251106-10] Rizzardi K et al. (2011) TFL2/LHP1 is involved in auxin biosynthesis through positive regulation of YUCCA genes. Plant J 65: 897-906 PubMed GONUTS page

[PMID:21304947-11] Latrasse D et al. (2011) Control of flowering and cell fate by LIF2, an RNA binding partner of the polycomb complex component LHP1. PLoS One 6: e16592 PubMed GONUTS page

[PMID:11731464-12] 13.0 ^13.1 ^13.2 ^13.3 Gaudin V et al. (2001) Mutations in LIKE HETEROCHROMATIN PROTEIN 1 affect flowering time and plant architecture in Arabidopsis. Development 128: 4847-58 PubMed GONUTS page

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ARATH:LHP1

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