ARATH:DICER

Species (Taxon ID)	Arabidopsis thaliana (Mouse-ear cress). (3702)
Gene Name(s)	DCL1 (synonyms: ASU1, CAF SIN1, SUS1)
Protein Name(s)	Endoribonuclease Dicer homolog 1 Dicer-like protein 1 AtDCL1 Protein ABNORMAL SUSPENSOR 1 Protein CARPEL FACTORY Protein SHORT INTEGUMENTS 1 Protein SUSPENSOR 1
External Links
UniProt	Q9SP32
EMBL	AF187317 AF292940 AF292941 AC007323 CP002684
RefSeq	NP_171612.1
UniGene	At.22088 At.57123
PDB	2LRS
PDBsum	2LRS
ProteinModelPortal	Q9SP32
SMR	Q9SP32
BioGrid	24809
DIP	DIP-33454N
IntAct	Q9SP32
PaxDb	Q9SP32
PRIDE	Q9SP32
EnsemblPlants	AT1G01040.1
GeneID	839574
KEGG	ath:AT1G01040
TAIR	AT1G01040
eggNOG	COG1111
HOGENOM	HOG000239675
InParanoid	Q9SP32
KO	K11592
PhylomeDB	Q9SP32
BioCyc	ARA:AT1G01040-MONOMER ARA:GQT-1487-MONOMER
Proteomes	UP000006548
ExpressionAtlas	Q9SP32
Genevestigator	Q9SP32
GO	GO:0005634 GO:0005524 GO:0003677 GO:0004386 GO:0046872 GO:0004525 GO:0003723 GO:0031047 GO:0006396 GO:0016075
Gene3D	1.10.1520.10 3.30.160.20 3.40.50.300
HAMAP	MF_00104
InterPro	IPR005034 IPR014720 IPR006935 IPR014001 IPR001650 IPR027417 IPR003100 IPR011907 IPR000999
Pfam	PF03368 PF00035 PF00271 PF02170 PF04851 PF00636
SMART	SM00487 SM00358 SM00490 SM00949 SM00535
SUPFAM	SSF101690 SSF52540 SSF69065
PROSITE	PS51327 PS50137 PS51192 PS51194 PS50821 PS00517 PS50142

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Extension	Notes	Status
involved_in	GO:0030422	production of siRNA involved in RNA interference		ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0034246 FB:FBgn0039016 MGI:MGI:2177178 PANTHER:PTN000383724 PomBase:SPCC188.13c UniProtKB:Q9LXW7 UniProtKB:Q9UPY3 WB:WBGene00000939	P		Seeded From UniProt	complete
part_of	GO:0016442	RISC complex		ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0034246 FB:FBgn0039016 PANTHER:PTN000383724 UniProtKB:Q9UPY3	C		Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm		ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0034246 FB:FBgn0039016 MGI:MGI:2177178 PANTHER:PTN000383724 PomBase:SPCC188.13c TAIR:locus:2092409 WB:WBGene00000939	C		Seeded From UniProt	complete
part_of	GO:0005634	nucleus		ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0034246 FB:FBgn0039016 PANTHER:PTN000383724 PomBase:SPCC188.13c TAIR:locus:2092409 UniProtKB:P84634 UniProtKB:Q9LXW7 UniProtKB:Q9SP32 WB:WBGene00000939	C		Seeded From UniProt	complete
enables	GO:0004525	ribonuclease III activity		ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0034246 MGI:MGI:2177178 PANTHER:PTN000383724 TAIR:locus:2092409 UniProtKB:Q9UPY3 WB:WBGene00000939	F		Seeded From UniProt	complete
involved_in	GO:0090305	nucleic acid phosphodiester bond hydrolysis	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0004519	P		Seeded From UniProt	complete
involved_in	GO:0090305	nucleic acid phosphodiester bond hydrolysis	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0004518	P		Seeded From UniProt	complete
involved_in	GO:0090501	RNA phosphodiester bond hydrolysis	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0004525	P		Seeded From UniProt	complete
involved_in	GO:0090501	RNA phosphodiester bond hydrolysis	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0004525	P		Seeded From UniProt	complete
involved_in	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0004525	P		Seeded From UniProt	complete
involved_in	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0016891	P		Seeded From UniProt	complete
involved_in	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0004525	P		Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR006935	F		Seeded From UniProt	complete
enables	GO:0003723	RNA binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR011907	F		Seeded From UniProt	complete
enables	GO:0004525	ribonuclease III activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000999 InterPro:IPR011907 InterPro:IPR036389	F		Seeded From UniProt	complete
enables	GO:0005524	ATP binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR006935	F		Seeded From UniProt	complete
involved_in	GO:0006396	RNA processing	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000999 InterPro:IPR036389	P		Seeded From UniProt	complete
involved_in	GO:0016075	rRNA catabolic process	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR011907	P		Seeded From UniProt	complete
enables	GO:0016787	hydrolase activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR006935	F		Seeded From UniProt	complete
enables	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR005034	F		Seeded From UniProt	complete
enables	GO:0000166	nucleotide binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0547	F		Seeded From UniProt	complete
enables	GO:0004386	helicase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0347	F		Seeded From UniProt	complete
enables	GO:0004519	endonuclease activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0255	F		Seeded From UniProt	complete
enables	GO:0016787	hydrolase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0378	F		Seeded From UniProt	complete
enables	GO:0005524	ATP binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0067	F		Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C		Seeded From UniProt	complete
enables	GO:0046872	metal ion binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0479	F		Seeded From UniProt	complete
enables	GO:0004518	nuclease activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0540	F		Seeded From UniProt	complete
enables	GO:0003723	RNA binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0694	F		Seeded From UniProt	complete
involved_in	GO:0031047	gene silencing by RNA	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0943	P		Seeded From UniProt	complete
edit table

References

See Help:References for how to manage references in GONUTS.